Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.258771	4930553P13Rik	RIKEN cDNA 4930553P13 gene	17		75264
Mm.258771	9630010G10Rik	RIKEN cDNA 9630010G10 gene	17		399612
Mm.258771	Ptprs	protein tyrosine phosphatase, receptor type, S	17	17 D (17 33.8 cM)	19280
Gene Ontology	cell adhesion | extracellular space | hydrolase activity | integral to membrane | phosphoprotein phosphatase activity | plasma membrane | prenylated protein tyrosine phosphatase activity | protein amino acid dephosphorylation | protein binding | protein-tyrosine-phosphatase activity | receptor activity | transmembrane receptor protein tyrosine phosphatase signaling pathway
Human Homolog	PTPRS[protein tyrosine phosphatase, receptor type, S]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

Total 14 In Situ Hybridization Images

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SAGE Tags

Total 188 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CAGGCCACAC (8) 138.7 0.1387 P8 Cb GC GAGGACCTGG (8) 24.5 0.0245 P8 Cb GC TGAATGGTGC (4) 8.2 0.0082 P8 Cb GC TGGGAAAGAT (4) 6.5 0.0065 P8 Cb GC GGCCCCGCCC (6) 4.9 0.0049 P8 Cb GC TCCCTGTAGT (4) 4.9 0.0049 P8 Cb GC GTGCAGACAG (5) 3.3 0.0033 P8 Cb GC TGTAATAAGA (11) 3.3 0.0033 P8 Cb GC TGTGGTGGAG (7) 3.3 0.0033 P8 Cb GC AGTAGACGAG (3) 1.6 0.0016 P8 Cb GC GGAGATTTTA (10) 1.6 0.0016 Cb medulloblastoma CAGGCCACAC (8) 270.6 0.2706 Cb medulloblastoma TGGGAAAGAT (4) 6.9 0.0069 Cb medulloblastoma GAGGACCTGG (8) 4.6 0.0046 Cb medulloblastoma GGAGATTTTA (10) 4.6 0.0046 Cb medulloblastoma CACTGCCCAC (7) 2.3 0.0023 Cb medulloblastoma GGCCCCGCCC (6) 2.3 0.0023 Cb medulloblastoma GGGAGAAGAA (6) 2.3 0.0023 Cb medulloblastoma TCCCTGTAGT (4) 2.3 0.0023 Cb medulloblastoma TGAATGGTGC (4) 2.3 0.0023 Cb medulloblastoma TGTGGTGGAG (7) 2.3 0.0023 P8 GC+1d culture CAGGCCACAC (8) 97 0.097 P8 GC+1d culture GAGGACCTGG (8) 13.7 0.0137 P8 GC+1d culture GGAGATTTTA (10) 8 0.008 P8 GC+1d culture GGCCCCGCCC (6) 5.7 0.0057 P8 GC+1d culture TCCCTGTAGT (4) 4.6 0.0046 P8 GC+1d culture TGTGGTGGAG (7) 4.6 0.0046 P8 GC+1d culture TGAATGGTGC (4) 3.4 0.0034 P8 GC+1d culture TGGGAAAGAT (4) 3.4 0.0034 P8 GC+1d culture AGTAGACGAG (3) 2.3 0.0023 P8 GC+1d culture GAAGGGAATG (4) 1.1 0.0011 P8 GC+SHH+1d culture CAGGCCACAC (8) 125.3 0.1253 P8 GC+SHH+1d culture GAGGACCTGG (8) 22.2 0.0222 P8 GC+SHH+1d culture TGGGAAAGAT (4) 17.6 0.0176 P8 GC+SHH+1d culture GGCCCCGCCC (6) 10.5 0.0105 P8 GC+SHH+1d culture TGAATGGTGC (4) 5.9 0.0059 P8 GC+SHH+1d culture TCCCTGTAGT (4) 3.5 0.0035 P8 GC+SHH+1d culture TGTGGTGGAG (7) 3.5 0.0035 P8 GC+SHH+1d culture TGTAATAAGA (11) 2.3 0.0023 P8 GC+SHH+1d culture CTGCCCCAGC (5) 1.2 0.0012 P8 GC+SHH+1d culture GGAGATTTTA (10) 1.2 0.0012 P8 GC+SHH+1d culture GGCTCTGCCA (6) 1.2 0.0012 P8 GC+SHH+1d culture GGGAGAAGAG (8) 1.2 0.0012 P8 GC+SHH+1d culture GGGATGGGGG (4) 1.2 0.0012 P8 GC+SHH+1d culture GTGCAGACAG (5) 1.2 0.0012 3T3 fibroblasts CAGGCCACAC (8) 140.2 0.1402 3T3 fibroblasts TGGGAAAGAT (4) 10.5 0.0105 3T3 fibroblasts TGTGGTGGAG (7) 10.5 0.0105 3T3 fibroblasts TCCCTGTAGT (4) 7 0.007 3T3 fibroblasts CTCTGTGCTG (14) 3.5 0.0035 3T3 fibroblasts GAGGACCTGG (8) 3.5 0.0035 3T3 fibroblasts GGCCCCGCCC (6) 3.5 0.0035 3T3 fibroblasts GGCTCTGCCA (6) 3.5 0.0035 E15 cortex CAGGCCACAC (8) 84.1 0.0841 E15 cortex GGCCCCGCCC (6) 29.7 0.0297 E15 cortex GAGGACCTGG (8) 24.7 0.0247 E15 cortex GGAGATTTTA (10) 14.8 0.0148 E15 cortex GGCTCTGCCA (6) 4.9 0.0049 E15 cortex TGGGAAAGAT (4) 4.9 0.0049 E15 cortex TGTGGTGGAG (7) 4.9 0.0049 P1 cortex CAGGCCACAC (8) 27.3 0.0273 P1 cortex TGGGAAAGAT (4) 22.7 0.0227 P1 cortex GAGGACCTGG (8) 13.6 0.0136 P1 cortex GGAGATTTTA (10) 13.6 0.0136 P1 cortex TGTAATAAGA (11) 9.1 0.0091 P1 cortex TCCCTGTAGT (4) 4.5 0.0045 Hypothalamus CAGGCCACAC (8) 148.5 0.1485 Hypothalamus GAGGACCTGG (8) 7.2 0.0072 Hypothalamus TCCCTGTAGT (4) 7.2 0.0072 Hypothalamus TGTGGTGGAG (7) 7.2 0.0072 Hypothalamus TGAATGGTGC (4) 3.6 0.0036 Hypothalamus CTCTGTGCTG (14) 1.8 0.0018 Hypothalamus GGAGATTTTA (10) 1.8 0.0018 Hypothalamus GGCCCCGCCC (6) 1.8 0.0018 Hypothalamus TGGGAAAGAT (4) 1.8 0.0018 E12.5 retina CAGGCCACAC (8) 103.3 0.1033 E12.5 retina TGGGAAAGAT (4) 13.1 0.0131 E12.5 retina GAGGACCTGG (8) 11.3 0.0113 E12.5 retina TGAATGGTGC (4) 5.6 0.0056 E12.5 retina TGTAATAAGA (11) 5.6 0.0056 E12.5 retina TGTGGTGGAG (7) 5.6 0.0056 E12.5 retina TCCCTGTAGT (4) 3.8 0.0038 E12.5 retina GGCCCCGCCC (6) 1.9 0.0019 E12.5 retina GGCTCTGCCA (6) 1.9 0.0019 E12.5 retina GGGAGAAGAG (8) 1.9 0.0019 E14.5 retina CAGGCCACAC (8) 138.5 0.1385 E14.5 retina GAGGACCTGG (8) 10.9 0.0109 E14.5 retina AGTAGACGAG (3) 3.6 0.0036 E14.5 retina TGTGGTGGAG (7) 3.6 0.0036 E14.5 retina GGAGATTTTA (10) 1.8 0.0018 E14.5 retina GTGCAGACAG (5) 1.8 0.0018 E14.5 retina TCCCTGTAGT (4) 1.8 0.0018 E14.5 retina TGGGAAAGAT (4) 1.8 0.0018 E16.5 retina CAGGCCACAC (8) 126.8 0.1268 E16.5 retina GAGGACCTGG (8) 18.1 0.0181 E16.5 retina TGGGAAAGAT (4) 18.1 0.0181 E16.5 retina TCCCTGTAGT (4) 5.4 0.0054 E16.5 retina AGTAGACGAG (3) 1.8 0.0018 E16.5 retina GAAGGGAATG (4) 1.8 0.0018 E16.5 retina GGCCCCGCCC (6) 1.8 0.0018 E16.5 retina GTGCAGACAG (5) 1.8 0.0018 E16.5 retina TGAATGGTGC (4) 1.8 0.0018 E18.5 retina CAGGCCACAC (8) 112.8 0.1128 E18.5 retina GAGGACCTGG (8) 12.7 0.0127 E18.5 retina TGTGGTGGAG (7) 10.9 0.0109 E18.5 retina TGGGAAAGAT (4) 9.1 0.0091 E18.5 retina AGTAGACGAG (3) 1.8 0.0018 E18.5 retina GGCCCCGCCC (6) 1.8 0.0018 E18.5 retina GGCTCTGCCA (6) 1.8 0.0018 E18.5 retina GGGAGAAGAG (8) 1.8 0.0018 E18.5 retina TCCCTGTAGT (4) 1.8 0.0018 E18.5 retina TGAATGGTGC (4) 1.8 0.0018 P0.5 retina CAGGCCACAC (8) 90.3 0.0903 P0.5 retina GAGGACCTGG (8) 15.7 0.0157 P0.5 retina TCCCTGTAGT (4) 15.7 0.0157 P0.5 retina TGGGAAAGAT (4) 9.8 0.0098 P0.5 retina TGAATGGTGC (4) 7.9 0.0079 P0.5 retina TGTGGTGGAG (7) 5.9 0.0059 P0.5 retina CTCTGTGCTG (14) 2 0.002 P0.5 retina CTGCCCCAGC (5) 2 0.002 P0.5 retina GGCCCCGCCC (6) 2 0.002 P0.5 retina GTGCAGACAG (5) 2 0.002 P0.5 retina TTGTGGTTAT (3) 2 0.002 P2.5 retina CAGGCCACAC (8) 88 0.088 P2.5 retina GAGGACCTGG (8) 22.9 0.0229 P2.5 retina TGTGGTGGAG (7) 15.8 0.0158 P2.5 retina TGGGAAAGAT (4) 14.1 0.0141 P2.5 retina TGTAATAAGA (11) 5.3 0.0053 P2.5 retina TCCCTGTAGT (4) 3.5 0.0035 P2.5 retina TGAATGGTGC (4) 3.5 0.0035 P2.5 retina CACTGCCCAC (7) 1.8 0.0018 P2.5 retina CTCTGTGCTG (14) 1.8 0.0018 P2.5 retina GGCCCCGCCC (6) 1.8 0.0018 P2.5 retina GGGATGGGGG (4) 1.8 0.0018 P2.5 retina GTGCAGACAG (5) 1.8 0.0018 P4.5 retina CAGGCCACAC (8) 93.1 0.0931 P4.5 retina GAGGACCTGG (8) 25.8 0.0258 P4.5 retina TCCCTGTAGT (4) 13.9 0.0139 P4.5 retina TGGGAAAGAT (4) 13.9 0.0139 P4.5 retina TGTGGTGGAG (7) 11.9 0.0119 P4.5 retina CTCTGTGCTG (14) 2 0.002 P4.5 retina CTGCCCCAGC (5) 2 0.002 P4.5 retina GGCCCCGCCC (6) 2 0.002 P4.5 retina GGGAGAAGAG (8) 2 0.002 P4.5 retina GGGATGGGGG (4) 2 0.002 P4.5 retina TGAATGGTGC (4) 2 0.002 P4.5 retina TTGTGGTTAT (3) 2 0.002 P6.5 retina CAGGCCACAC (8) 161.7 0.1617 P6.5 retina TCCCTGTAGT (4) 13.3 0.0133 P6.5 retina TGGGAAAGAT (4) 11.7 0.0117 P6.5 retina GAGGACCTGG (8) 10 0.01 P6.5 retina TGTGGTGGAG (7) 8.3 0.0083 P6.5 retina CTCTGTGCTG (14) 3.3 0.0033 P6.5 retina TGTAATAAGA (11) 3.3 0.0033 P6.5 retina AGGACCTGGG (7) 1.7 0.0017 P6.5 retina GAAGGGAATG (4) 1.7 0.0017 P6.5 retina TGAATGGTGC (4) 1.7 0.0017 P6.5 retina TTGTGGTTAT (3) 1.7 0.0017 P10.5 crx- retina CAGGCCACAC (8) 189.5 0.1895 P10.5 crx- retina TCCCTGTAGT (4) 13 0.013 P10.5 crx- retina TGTGGTGGAG (7) 11.1 0.0111 P10.5 crx- retina TGGGAAAGAT (4) 9.3 0.0093 P10.5 crx- retina GAGGACCTGG (8) 7.4 0.0074 P10.5 crx- retina AGGACCTGGG (7) 1.9 0.0019 P10.5 crx- retina CTCTGTGCTG (14) 1.9 0.0019 P10.5 crx- retina GGCCCCGCCC (6) 1.9 0.0019 P10.5 crx- retina GGGAGAAGAG (8) 1.9 0.0019 P10.5 crx- retina TGAATGGTGC (4) 1.9 0.0019 P10.5 crx+ retina CAGGCCACAC (8) 207.6 0.2076 P10.5 crx+ retina TGTGGTGGAG (7) 13.5 0.0135 P10.5 crx+ retina TGAATGGTGC (4) 7.7 0.0077 P10.5 crx+ retina GAGGACCTGG (8) 5.8 0.0058 P10.5 crx+ retina TCCCTGTAGT (4) 5.8 0.0058 P10.5 crx+ retina GGCCCCGCCC (6) 3.8 0.0038 P10.5 crx+ retina TGGGAAAGAT (4) 3.8 0.0038 Adult retinal CAGGCCACAC (8) 137 0.137 Adult retinal TCCCTGTAGT (4) 11.1 0.0111 Adult retinal GAGGACCTGG (8) 7.4 0.0074 Adult retinal TGTGGTGGAG (7) 3.7 0.0037 Adult retinal GGCTCTGCCA (6) 1.9 0.0019 Adult retinal TGGGAAAGAT (4) 1.9 0.0019 ONL CAGGCCACAC (8) 88.1 0.0881 ONL TCCCTGTAGT (4) 7.7 0.0077 ONL TGTGGTGGAG (7) 5.7 0.0057 ONL GAGGACCTGG (8) 3.8 0.0038 ONL GGGAGAAGAA (6) 3.8 0.0038 ONL AGGACCTGGG (7) 1.9 0.0019 ONL CACTGCCCAC (7) 1.9 0.0019