Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.259220
4930513N10Rik
RIKEN cDNA 4930513N10 gene
8
319960
Mm.259220
6030411K04Rik
RIKEN cDNA 6030411K04 gene
8
234594
Human Homolog
KIAA1007[KIAA1007 protein]
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 85 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
CAAAAAAAAA (
157
)
47.3
0.0473
P8 Cb GC
TGTTTTGGAA (
10
)
4.9
0.0049
P8 Cb GC
GGACAGAAGC
(
9
)
1.6
0.0016
P8 Cb GC
TATTTAATGT (
7
)
1.6
0.0016
Cb medulloblastoma
CAAAAAAAAA (
157
)
92.5
0.0925
Cb medulloblastoma
TGTTTTGGAA (
10
)
16.2
0.0162
Cb medulloblastoma
TGTGGAAACC (
5
)
2.3
0.0023
P8 GC+1d culture
CAAAAAAAAA (
157
)
37.7
0.0377
P8 GC+1d culture
GGACAGAAGC
(
9
)
3.4
0.0034
P8 GC+1d culture
TGTTTTGGAA (
10
)
3.4
0.0034
P8 GC+1d culture
TGTGGAAACC (
5
)
2.3
0.0023
P8 GC+1d culture
TATGTGTGAA
(
3
)
1.1
0.0011
P8 GC+SHH+1d culture
CAAAAAAAAA (
157
)
58.5
0.0585
P8 GC+SHH+1d culture
TGTTTTGGAA (
10
)
7
0.007
P8 GC+SHH+1d culture
GGACAGAAGC
(
9
)
1.2
0.0012
P8 GC+SHH+1d culture
TGTGGAAACC (
5
)
1.2
0.0012
P8 GC+SHH+1d culture
TGTTGGAACC
(
3
)
1.2
0.0012
3T3 fibroblasts
GGACAGAAGC
(
9
)
3.5
0.0035
3T3 fibroblasts
TGTTTTGGAA (
10
)
3.5
0.0035
E15 cortex
CAAAAAAAAA (
157
)
34.6
0.0346
E15 cortex
TGTGGAAACC (
5
)
4.9
0.0049
E15 cortex
TGTTTTGGAA (
10
)
4.9
0.0049
P1 cortex
CAAAAAAAAA (
157
)
22.7
0.0227
P1 cortex
CTAATGGAAA (
6
)
4.5
0.0045
P1 cortex
TATTTAATGT (
7
)
4.5
0.0045
Hypothalamus
CAAAAAAAAA (
157
)
39.8
0.0398
Hypothalamus
TGTTTTGGAA (
10
)
9.1
0.0091
Hypothalamus
TTTCAGAACA
(
6
)
5.4
0.0054
Hypothalamus
TGTGGAAACC (
5
)
3.6
0.0036
Hypothalamus
CTAATGGAAA (
6
)
1.8
0.0018
E12.5 retina
CAAAAAAAAA (
157
)
22.5
0.0225
E12.5 retina
TGTTTTGGAA (
10
)
13.1
0.0131
E12.5 retina
GGACAGAAGC
(
9
)
1.9
0.0019
E12.5 retina
TGTGGAAACC (
5
)
1.9
0.0019
E14.5 retina
TGTTTTGGAA (
10
)
21.9
0.0219
E14.5 retina
CAAAAAAAAA (
157
)
9.1
0.0091
E14.5 retina
TATTTAATGT (
7
)
1.8
0.0018
E14.5 retina
TTTCAGAACA
(
6
)
1.8
0.0018
E16.5 retina
TGTTTTGGAA (
10
)
29
0.029
E16.5 retina
CAAAAAAAAA (
157
)
9.1
0.0091
E16.5 retina
GGACAGAAGC
(
9
)
1.8
0.0018
E16.5 retina
TGTGGAAACC (
5
)
1.8
0.0018
E16.5 retina
TTTCAGAACA
(
6
)
1.8
0.0018
E18.5 retina
CAAAAAAAAA (
157
)
41.8
0.0418
E18.5 retina
TGTTTTGGAA (
10
)
20
0.02
E18.5 retina
TGTGGAAACC (
5
)
5.5
0.0055
E18.5 retina
CTAATGGAAA (
6
)
1.8
0.0018
E18.5 retina
TATGTGTGAA
(
3
)
1.8
0.0018
P0.5 retina
CAAAAAAAAA (
157
)
137.4
0.1374
P0.5 retina
TGTTTTGGAA (
10
)
7.9
0.0079
P0.5 retina
GGACAGAAGC
(
9
)
2
0.002
P0.5 retina
TATGTGTGAA
(
3
)
2
0.002
P0.5 retina
TGTTGGAACC
(
3
)
2
0.002
P2.5 retina
CAAAAAAAAA (
157
)
52.8
0.0528
P2.5 retina
TGTTTTGGAA (
10
)
14.1
0.0141
P2.5 retina
TGTTGGAACC
(
3
)
1.8
0.0018
P4.5 retina
CAAAAAAAAA (
157
)
41.6
0.0416
P4.5 retina
TGTTTTGGAA (
10
)
25.8
0.0258
P4.5 retina
TGTGGAAACC (
5
)
7.9
0.0079
P4.5 retina
GGACAGAAGC
(
9
)
2
0.002
P4.5 retina
TATTTAATGT (
7
)
2
0.002
P6.5 retina
CAAAAAAAAA (
157
)
31.7
0.0317
P6.5 retina
TGTGGAAACC (
5
)
13.3
0.0133
P6.5 retina
TGTTTTGGAA (
10
)
6.7
0.0067
P6.5 retina
TGTTGGAACC
(
3
)
1.7
0.0017
P10.5 crx- retina
TGTTTTGGAA (
10
)
20.4
0.0204
P10.5 crx- retina
CAAAAAAAAA (
157
)
13
0.013
P10.5 crx- retina
TGTGGAAACC (
5
)
3.7
0.0037
P10.5 crx- retina
GGACAGAAGC
(
9
)
1.9
0.0019
P10.5 crx- retina
TATGTGTGAA
(
3
)
1.9
0.0019
P10.5 crx+ retina
CAAAAAAAAA (
157
)
32.7
0.0327
P10.5 crx+ retina
TGTTTTGGAA (
10
)
7.7
0.0077
P10.5 crx+ retina
GGACAGAAGC
(
9
)
3.8
0.0038
P10.5 crx+ retina
TGTGGAAACC (
5
)
3.8
0.0038
P10.5 crx+ retina
TATTTAATGT (
7
)
1.9
0.0019
P10.5 crx+ retina
TTTCAGAACA
(
6
)
1.9
0.0019
Adult retinal
CAAAAAAAAA (
157
)
20.4
0.0204
Adult retinal
TGTGGAAACC (
5
)
9.3
0.0093
Adult retinal
TGTTTTGGAA (
10
)
5.6
0.0056
Adult retinal
GGACAGAAGC
(
9
)
1.9
0.0019
ONL
CAAAAAAAAA (
157
)
17.2
0.0172
ONL
TGTTGGAACC
(
3
)
3.8
0.0038
ONL
GGACAGAAGC
(
9
)
1.9
0.0019
ONL
TGTGGAAACC (
5
)
1.9
0.0019
ONL
TGTTTTGGAA (
10
)
1.9
0.0019
