Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.259258
D6Ertd415e
DNA segment, Chr 6, ERATO Doi 415, expressed
6
6 7.2 cM
52128
Mm.259258
Nrf1
nuclear respiratory factor 1
6
6 6.5 cM
18181
Mm.259258
1700080G18Rik
RIKEN cDNA 1700080G18 gene
6
73533
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 60 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
TTAAAAAAAA (
80
)
13.1
0.0131
P8 Cb GC
AAGAATCTTT
(
7
)
3.3
0.0033
P8 Cb GC
GTTGTTTTCC (
4
)
3.3
0.0033
P8 Cb GC
TCTTGCTCAA
(
3
)
3.3
0.0033
P8 Cb GC
TCTTGCTCAG
(
6
)
1.6
0.0016
Cb medulloblastoma
TTAAAAAAAA (
80
)
53.2
0.0532
Cb medulloblastoma
GAATCTGTGT
(
3
)
2.3
0.0023
P8 GC+1d culture
TTAAAAAAAA (
80
)
28.5
0.0285
P8 GC+1d culture
TCTTGCTCAG
(
6
)
4.6
0.0046
P8 GC+1d culture
GAATCTGTGT
(
3
)
2.3
0.0023
P8 GC+1d culture
TCTTGCTCAA
(
3
)
1.1
0.0011
P8 GC+SHH+1d culture
TTAAAAAAAA (
80
)
34
0.034
P8 GC+SHH+1d culture
TCTTGCTCAA
(
3
)
5.9
0.0059
P8 GC+SHH+1d culture
TCTTGCTCAG
(
6
)
1.2
0.0012
E15 cortex
TTAAAAAAAA (
80
)
4.9
0.0049
P1 cortex
TTAAAAAAAA (
80
)
13.6
0.0136
Hypothalamus
TTAAAAAAAA (
80
)
19.9
0.0199
E12.5 retina
TTAAAAAAAA (
80
)
11.3
0.0113
E12.5 retina
TCTTGCTCAA
(
3
)
3.8
0.0038
E12.5 retina
AAGAATCTTT
(
7
)
1.9
0.0019
E12.5 retina
TCTTGCTCAG
(
6
)
1.9
0.0019
E12.5 retina
TTTGAGAGGT (
6
)
1.9
0.0019
E14.5 retina
TTAAAAAAAA (
80
)
16.4
0.0164
E14.5 retina
AAGAATCTTT
(
7
)
1.8
0.0018
E14.5 retina
TCTTGCTCAA
(
3
)
1.8
0.0018
E16.5 retina
TTAAAAAAAA (
80
)
16.3
0.0163
E16.5 retina
TCTTGCTCAG
(
6
)
5.4
0.0054
E16.5 retina
AAGAATCTTT
(
7
)
1.8
0.0018
E18.5 retina
TTAAAAAAAA (
80
)
50.9
0.0509
E18.5 retina
TCTTGCTCAG
(
6
)
7.3
0.0073
E18.5 retina
TCTTGCTCAA
(
3
)
3.6
0.0036
P0.5 retina
TTAAAAAAAA (
80
)
17.7
0.0177
P0.5 retina
TCTTGCTCAA
(
3
)
3.9
0.0039
P0.5 retina
GTTGTCTTCC
(
4
)
2
0.002
P2.5 retina
TTAAAAAAAA (
80
)
40.5
0.0405
P2.5 retina
AAGAATCTTT
(
7
)
1.8
0.0018
P2.5 retina
GAATCTGTGT
(
3
)
1.8
0.0018
P2.5 retina
TCTTGCTCAA
(
3
)
1.8
0.0018
P2.5 retina
TCTTGCTCAG
(
6
)
1.8
0.0018
P2.5 retina
TTTGAGAGGT (
6
)
1.8
0.0018
P4.5 retina
TTAAAAAAAA (
80
)
47.6
0.0476
P4.5 retina
TCTTGCTCAA
(
3
)
4
0.004
P4.5 retina
TCTTGCTCAG
(
6
)
4
0.004
P4.5 retina
AAGAATCTTT
(
7
)
2
0.002
P4.5 retina
GAATCTGTGT
(
3
)
2
0.002
P6.5 retina
TTAAAAAAAA (
80
)
16.7
0.0167
P6.5 retina
TCTTGCTCAG
(
6
)
5
0.005
P6.5 retina
AAGAATCTTT
(
7
)
1.7
0.0017
P6.5 retina
GTTGTCTTCC
(
4
)
1.7
0.0017
P6.5 retina
TCTTGCTCAA
(
3
)
1.7
0.0017
P10.5 crx- retina
TTAAAAAAAA (
80
)
13
0.013
P10.5 crx+ retina
TTAAAAAAAA (
80
)
5.8
0.0058
P10.5 crx+ retina
TCTTGCTCAG
(
6
)
3.8
0.0038
P10.5 crx+ retina
TTTGAGAGGT (
6
)
1.9
0.0019
Adult retinal
TTAAAAAAAA (
80
)
7.4
0.0074
Adult retinal
TTTGAGAGGT (
6
)
1.9
0.0019
ONL
TTAAAAAAAA (
80
)
7.7
0.0077
ONL
TTTGAGAGGT (
6
)
3.8
0.0038
ONL
GTTGTCTTCC
(
4
)
1.9
0.0019
ONL
TCTTGCTCAG
(
6
)
1.9
0.0019
