Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.259295	Pknox1	Pbx/knotted 1 homeobox	17	17 18.0 cM	18771
Gene Ontology	DNA binding | nucleus | protein binding | regulation of transcription from Pol II promoter | regulation of transcription, DNA-dependent | RNA polymerase II transcription factor activity, enhancer binding | transcription factor activity | transcription factor complex
Human Homolog	PKNOX1[PBX/knotted 1 homeobox 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 82 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAAAAAAAAA (658) 203.9 0.2039 P8 Cb GC CAAAAAAAAA (157) 47.3 0.0473 P8 Cb GC AACACACACC (5) 8.2 0.0082 P8 Cb GC GCTGCCTGGC (6) 1.6 0.0016 Cb medulloblastoma AAAAAAAAAA (658) 797.8 0.7978 Cb medulloblastoma CAAAAAAAAA (157) 92.5 0.0925 Cb medulloblastoma GCTGCCTGGC (6) 2.3 0.0023 P8 GC+1d culture AAAAAAAAAA (658) 204.3 0.2043 P8 GC+1d culture CAAAAAAAAA (157) 37.7 0.0377 P8 GC+1d culture GCTGGCAGGG (4) 5.7 0.0057 P8 GC+1d culture AACACACACC (5) 1.1 0.0011 P8 GC+1d culture CCTTGTGGAA (3) 1.1 0.0011 P8 GC+1d culture GCTGCCTGGC (6) 1.1 0.0011 P8 GC+SHH+1d culture AAAAAAAAAA (658) 278.7 0.2787 P8 GC+SHH+1d culture CAAAAAAAAA (157) 58.5 0.0585 P8 GC+SHH+1d culture GCTGGCAGGG (4) 3.5 0.0035 P8 GC+SHH+1d culture GCACAGTGGC (2) 2.3 0.0023 P8 GC+SHH+1d culture GCTGCCTGGC (6) 2.3 0.0023 P8 GC+SHH+1d culture CCTTGTGAAA 1.2 0.0012 P8 GC+SHH+1d culture CCTTGTGGAA (3) 1.2 0.0012 3T3 fibroblasts AAAAAAAAAA (658) 28 0.028 3T3 fibroblasts AACACACACC (5) 7 0.007 3T3 fibroblasts GCTGGCAGGG (4) 3.5 0.0035 E15 cortex AAAAAAAAAA (658) 212.8 0.2128 E15 cortex CAAAAAAAAA (157) 34.6 0.0346 E15 cortex GCTGGCAGGG (4) 4.9 0.0049 P1 cortex AAAAAAAAAA (658) 245.4 0.2454 P1 cortex CAAAAAAAAA (157) 22.7 0.0227 P1 cortex GCTGGCAGGG (4) 4.5 0.0045 Hypothalamus AAAAAAAAAA (658) 123.2 0.1232 Hypothalamus CAAAAAAAAA (157) 39.8 0.0398 Hypothalamus GCTGCCTGGC (6) 1.8 0.0018 E12.5 retina AAAAAAAAAA (658) 138.9 0.1389 E12.5 retina CAAAAAAAAA (157) 22.5 0.0225 E12.5 retina AACACACACC (5) 1.9 0.0019 E12.5 retina GCACAGTGGC (2) 1.9 0.0019 E14.5 retina AAAAAAAAAA (658) 94.7 0.0947 E14.5 retina CAAAAAAAAA (157) 9.1 0.0091 E14.5 retina AACACACACC (5) 1.8 0.0018 E14.5 retina CCTTGTGAAA 1.8 0.0018 E16.5 retina AAAAAAAAAA (658) 43.5 0.0435 E16.5 retina CAAAAAAAAA (157) 9.1 0.0091 E16.5 retina GCACAGTGGC (2) 1.8 0.0018 E18.5 retina AAAAAAAAAA (658) 374.7 0.3747 E18.5 retina CAAAAAAAAA (157) 41.8 0.0418 P0.5 retina CAAAAAAAAA (157) 137.4 0.1374 P0.5 retina AAAAAAAAAA (658) 117.8 0.1178 P0.5 retina AACACACACC (5) 5.9 0.0059 P2.5 retina AAAAAAAAAA (658) 329.1 0.3291 P2.5 retina CAAAAAAAAA (157) 52.8 0.0528 P2.5 retina AACACACACC (5) 1.8 0.0018 P2.5 retina CCTTGTGGAA (3) 1.8 0.0018 P4.5 retina AAAAAAAAAA (658) 283.3 0.2833 P4.5 retina CAAAAAAAAA (157) 41.6 0.0416 P4.5 retina AACACACACC (5) 2 0.002 P4.5 retina GCTGCCTGGC (6) 2 0.002 P4.5 retina GCTGGCAGGG (4) 2 0.002 P6.5 retina AAAAAAAAAA (658) 266.8 0.2668 P6.5 retina CAAAAAAAAA (157) 31.7 0.0317 P6.5 retina AACACACACC (5) 1.7 0.0017 P6.5 retina GCTGCCTGGC (6) 1.7 0.0017 P6.5 retina GCTGGCAGGG (4) 1.7 0.0017 P10.5 crx- retina AAAAAAAAAA (658) 44.6 0.0446 P10.5 crx- retina CAAAAAAAAA (157) 13 0.013 P10.5 crx- retina AACACACACC (5) 7.4 0.0074 P10.5 crx- retina GCACAGTGGC (2) 1.9 0.0019 P10.5 crx+ retina AAAAAAAAAA (658) 96.1 0.0961 P10.5 crx+ retina CAAAAAAAAA (157) 32.7 0.0327 P10.5 crx+ retina AACACACACC (5) 1.9 0.0019 P10.5 crx+ retina CCTTGTGAAA 1.9 0.0019 P10.5 crx+ retina CCTTGTGGAA (3) 1.9 0.0019 P10.5 crx+ retina GCTGCCTGGC (6) 1.9 0.0019 P10.5 crx+ retina GCTGGCAGGG (4) 1.9 0.0019 Adult retinal AAAAAAAAAA (658) 57.4 0.0574 Adult retinal CAAAAAAAAA (157) 20.4 0.0204 Adult retinal AACACACACC (5) 7.4 0.0074 ONL AAAAAAAAAA (658) 103.4 0.1034 ONL CAAAAAAAAA (157) 17.2 0.0172 ONL AACACACACC (5) 1.9 0.0019 ONL GCACAGTGGC (2) 1.9 0.0019 ONL GCTGCCTGGC (6) 1.9 0.0019 ONL GCTGGCAGGG (4) 1.9 0.0019