Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.259301	D330018D10Rik	RIKEN cDNA D330018D10 gene	13		320074
Mm.259301	9430016E08Rik	RIKEN cDNA 9430016E08 gene	13		77298
Mm.259301	Rxrip110	retinoid X receptor interacting protein 110	13		20184
Gene Ontology	receptor activity
Human Homolog	RAP80[receptor associated protein 80]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 109 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GCCAAGGGTC (6) 31 0.031 P8 Cb GC ATGGCTCACA (25) 11.4 0.0114 P8 Cb GC CACAAAATAA (10) 6.5 0.0065 P8 Cb GC TCTGGCACTG (6) 6.5 0.0065 P8 Cb GC CGCTTTGCCA (4) 1.6 0.0016 P8 Cb GC GCCAAGTCCA (8) 1.6 0.0016 Cb medulloblastoma ATGGCTCACA (25) 20.8 0.0208 Cb medulloblastoma TCTGGCACTG (6) 16.2 0.0162 Cb medulloblastoma CACAAAATAA (10) 6.9 0.0069 Cb medulloblastoma GCCAAGGGTC (6) 4.6 0.0046 Cb medulloblastoma TGGAGGCCTG (9) 4.6 0.0046 P8 GC+1d culture GCCAAGGGTC (6) 37.7 0.0377 P8 GC+1d culture ATGGCTCACA (25) 33.1 0.0331 P8 GC+1d culture CACAAAATAA (10) 8 0.008 P8 GC+1d culture TCTGGCACTG (6) 5.7 0.0057 P8 GC+1d culture GCCAAGTCCA (8) 1.1 0.0011 P8 GC+1d culture TGGAGGCCTG (9) 1.1 0.0011 P8 GC+SHH+1d culture GCCAAGGGTC (6) 53.9 0.0539 P8 GC+SHH+1d culture ATGGCTCACA (25) 25.8 0.0258 P8 GC+SHH+1d culture TCTGGCACTG (6) 12.9 0.0129 P8 GC+SHH+1d culture CACAAAATAA (10) 5.9 0.0059 P8 GC+SHH+1d culture TGGAGGCCTG (9) 2.3 0.0023 P8 GC+SHH+1d culture GCCAAGTCCA (8) 1.2 0.0012 3T3 fibroblasts GCCAAGGGTC (6) 136.7 0.1367 3T3 fibroblasts ATGGCTCACA (25) 31.5 0.0315 3T3 fibroblasts TGGAGGCCTG (9) 3.5 0.0035 E15 cortex GCCAAGGGTC (6) 44.5 0.0445 E15 cortex ATGGCTCACA (25) 29.7 0.0297 E15 cortex TCTGGCACTG (6) 19.8 0.0198 E15 cortex GCCAAGTCCA (8) 14.8 0.0148 E15 cortex TGGGAGGCTG (5) 4.9 0.0049 P1 cortex GCCAAGGGTC (6) 18.2 0.0182 P1 cortex ATGGCTCACA (25) 13.6 0.0136 P1 cortex TGGAGGCCTG (9) 9.1 0.0091 Hypothalamus ATGGCTCACA (25) 43.5 0.0435 Hypothalamus TCTGGCACTG (6) 9.1 0.0091 Hypothalamus CACAAAATAA (10) 1.8 0.0018 Hypothalamus CGCTTTGCCA (4) 1.8 0.0018 Hypothalamus GCCAAGGGTC (6) 1.8 0.0018 Hypothalamus GCCAAGTCCA (8) 1.8 0.0018 Hypothalamus TGGAGGCCTG (9) 1.8 0.0018 Hypothalamus TGGGAGGCTG (5) 1.8 0.0018 E12.5 retina GCCAAGGGTC (6) 71.3 0.0713 E12.5 retina ATGGCTCACA (25) 48.8 0.0488 E12.5 retina TCTGGCACTG (6) 5.6 0.0056 E12.5 retina GCCAAGTCCA (8) 3.8 0.0038 E12.5 retina CACAAAATAA (10) 1.9 0.0019 E12.5 retina TCAGAAGAAG (8) 1.9 0.0019 E12.5 retina TGGAGGCCTG (9) 1.9 0.0019 E12.5 retina TGGGAGGCTG (5) 1.9 0.0019 E14.5 retina ATGGCTCACA (25) 47.4 0.0474 E14.5 retina GCCAAGGGTC (6) 21.9 0.0219 E14.5 retina TCTGGCACTG (6) 16.4 0.0164 E14.5 retina CACAAAATAA (10) 3.6 0.0036 E14.5 retina TCAGAAGAAG (8) 1.8 0.0018 E16.5 retina ATGGCTCACA (25) 58 0.058 E16.5 retina GCCAAGGGTC (6) 19.9 0.0199 E16.5 retina TCTGGCACTG (6) 9.1 0.0091 E16.5 retina GCCAAGTCCA (8) 3.6 0.0036 E16.5 retina CGCTTTGCCA (4) 1.8 0.0018 E16.5 retina TGGAGGCCTG (9) 1.8 0.0018 E18.5 retina ATGGCTCACA (25) 38.2 0.0382 E18.5 retina GCCAAGGGTC (6) 20 0.02 E18.5 retina TCTGGCACTG (6) 9.1 0.0091 E18.5 retina CACAAAATAA (10) 1.8 0.0018 E18.5 retina TGGAGGCCTG (9) 1.8 0.0018 P0.5 retina GCCAAGGGTC (6) 84.4 0.0844 P0.5 retina ATGGCTCACA (25) 35.3 0.0353 P0.5 retina TCTGGCACTG (6) 5.9 0.0059 P0.5 retina TGGAGGCCTG (9) 3.9 0.0039 P0.5 retina TGGGAGGCTG (5) 2 0.002 P2.5 retina GCCAAGGGTC (6) 35.2 0.0352 P2.5 retina ATGGCTCACA (25) 31.7 0.0317 P2.5 retina TCTGGCACTG (6) 15.8 0.0158 P2.5 retina TGGAGGCCTG (9) 5.3 0.0053 P2.5 retina CACAAAATAA (10) 3.5 0.0035 P2.5 retina GCCAAGTCCA (8) 3.5 0.0035 P4.5 retina GCCAAGGGTC (6) 25.8 0.0258 P4.5 retina ATGGCTCACA (25) 23.8 0.0238 P4.5 retina TCTGGCACTG (6) 9.9 0.0099 P4.5 retina CACAAAATAA (10) 4 0.004 P4.5 retina CGCTTTGCCA (4) 2 0.002 P6.5 retina ATGGCTCACA (25) 55 0.055 P6.5 retina GCCAAGGGTC (6) 31.7 0.0317 P6.5 retina CACAAAATAA (10) 8.3 0.0083 P6.5 retina TGGAGGCCTG (9) 3.3 0.0033 P6.5 retina TGGGAGGCTG (5) 3.3 0.0033 P6.5 retina TCTGGCACTG (6) 1.7 0.0017 P10.5 crx- retina GCCAAGGGTC (6) 52 0.052 P10.5 crx- retina ATGGCTCACA (25) 44.6 0.0446 P10.5 crx- retina TCTGGCACTG (6) 7.4 0.0074 P10.5 crx- retina CACAAAATAA (10) 5.6 0.0056 P10.5 crx+ retina ATGGCTCACA (25) 44.2 0.0442 P10.5 crx+ retina GCCAAGGGTC (6) 32.7 0.0327 P10.5 crx+ retina TCTGGCACTG (6) 13.5 0.0135 P10.5 crx+ retina CACAAAATAA (10) 7.7 0.0077 P10.5 crx+ retina TCAGAAGAAG (8) 1.9 0.0019 P10.5 crx+ retina TGGGAGGCTG (5) 1.9 0.0019 Adult retinal GCCAAGGGTC (6) 48.1 0.0481 Adult retinal ATGGCTCACA (25) 33.3 0.0333 Adult retinal TCTGGCACTG (6) 7.4 0.0074 Adult retinal CACAAAATAA (10) 1.9 0.0019 Adult retinal TGGAGGCCTG (9) 1.9 0.0019 Adult retinal TGGGAGGCTG (5) 1.9 0.0019 ONL ATGGCTCACA (25) 49.8 0.0498 ONL GCACACAACA (7) 17.2 0.0172 ONL GCCAAGGGTC (6) 7.7 0.0077 ONL CACAAAATAA (10) 5.7 0.0057 ONL TGGGAGGCTG (5) 1.9 0.0019