Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.259751	9030622M22Rik	RIKEN cDNA 9030622M22 gene	8		74547
Mm.259751	Clcn3	chloride channel 3	8	8 32.2 cM	12725
Gene Ontology	chloride transport | integral to membrane | ion channel activity | ion transport | membrane | voltage-gated chloride channel activity | voltage-gated ion channel activity
Human Homolog	CLCN3[chloride channel 3]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 52 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAGAATGCTT (2) 1.6 0.0016 P8 Cb GC ATACCTTCTG (2) 1.6 0.0016 P8 Cb GC CATCCTTTTT (2) 1.6 0.0016 Cb medulloblastoma AAGAATGCTT (2) 9.2 0.0092 Cb medulloblastoma GTATCCACTA (2) 6.9 0.0069 Cb medulloblastoma AGCCCTTTTA (2) 4.6 0.0046 P8 GC+1d culture AAGAATGCTT (2) 2.3 0.0023 P8 GC+1d culture ATACCTTCTG (2) 2.3 0.0023 P8 GC+1d culture TTAAACACTG (2) 1.1 0.0011 P8 GC+SHH+1d culture AAAAGTGACG (2) 2.3 0.0023 P8 GC+SHH+1d culture AAGAATGCTT (2) 1.2 0.0012 P8 GC+SHH+1d culture CATCCTTTTT (2) 1.2 0.0012 P8 GC+SHH+1d culture GTATCCACTA (2) 1.2 0.0012 3T3 fibroblasts GCCATTGGAG (3) 3.5 0.0035 E15 cortex ATACCTTCTG (2) 4.9 0.0049 P1 cortex AAGAATGCTT (2) 4.5 0.0045 P1 cortex ATACCTTCTG (2) 4.5 0.0045 Hypothalamus AAAAGTGACG (2) 1.8 0.0018 Hypothalamus AAGAATGCTT (2) 1.8 0.0018 Hypothalamus GCCATTGGAG (3) 1.8 0.0018 Hypothalamus GTATCCACTA (2) 1.8 0.0018 E12.5 retina AGCCCTTTTA (2) 1.9 0.0019 E12.5 retina GTATCCACTA (2) 1.9 0.0019 E14.5 retina AAGAATGCTT (2) 5.5 0.0055 E14.5 retina ATACCTTCTG (2) 1.8 0.0018 E16.5 retina AAGAATGCTT (2) 1.8 0.0018 E16.5 retina ATACCTTCTG (2) 1.8 0.0018 E18.5 retina AAAAGTGACG (2) 3.6 0.0036 E18.5 retina GCCATTGGAG (3) 1.8 0.0018 P0.5 retina AGCCCTTTTA (2) 2 0.002 P0.5 retina GTATCCACTA (2) 2 0.002 P2.5 retina AAGAATGCTT (2) 1.8 0.0018 P2.5 retina GTATCCACTA (2) 1.8 0.0018 P4.5 retina AAAAGTGACG (2) 2 0.002 P4.5 retina AAGAATGCTT (2) 2 0.002 P4.5 retina AGCCCTTTTA (2) 2 0.002 P6.5 retina AAGAATGCTT (2) 8.3 0.0083 P6.5 retina AAAAGTGACG (2) 1.7 0.0017 P6.5 retina AGCCCTTTTA (2) 1.7 0.0017 P10.5 crx- retina AAGAATGCTT (2) 16.7 0.0167 P10.5 crx- retina ACCCATCTTC (2) 3.7 0.0037 P10.5 crx- retina GTATCCACTA (2) 1.9 0.0019 P10.5 crx- retina TTAAACACTG (2) 1.9 0.0019 P10.5 crx+ retina AAAAGTGACG (2) 3.8 0.0038 P10.5 crx+ retina AAGAATGCTT (2) 1.9 0.0019 P10.5 crx+ retina ACCCATCTTC (2) 1.9 0.0019 P10.5 crx+ retina GTATCCACTA (2) 1.9 0.0019 Adult retinal AAGAATGCTT (2) 1.9 0.0019 ONL AAGAATGCTT (2) 1.9 0.0019 ONL ACCCATCTTC (2) 1.9 0.0019 ONL CATCCTTTTT (2) 1.9 0.0019 ONL TTAAACACTG (2) 1.9 0.0019