Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.260157	Rab3d	RAB3D, member RAS oncogene family	9		19340
Gene Ontology	exocytosis | GTP binding | intracellular | protein binding | protein transport | regulation of exocytosis | small GTPase mediated signal transduction | transport | zymogen granule
Human Homolog	RAB3D[RAB3D, member RAS oncogene family] | RAB3D[RAB3D, member RAS oncogene family]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 106 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CCAAAAAAAA (35) 22.8 0.0228 P8 Cb GC GGAGCAGGAG (5) 6.5 0.0065 P8 Cb GC GGGCTGGAAT (5) 6.5 0.0065 P8 Cb GC CCTTCTGCCT (7) 4.9 0.0049 P8 Cb GC GCGGGGGGGG (18) 1.6 0.0016 Cb medulloblastoma CCAAAAAAAA (35) 90.2 0.0902 Cb medulloblastoma GGAGCAGGAG (5) 20.8 0.0208 Cb medulloblastoma CCTTCTGCCT (7) 2.3 0.0023 Cb medulloblastoma GCGGGGGGGG (18) 2.3 0.0023 P8 GC+1d culture CCAAAAAAAA (35) 38.8 0.0388 P8 GC+1d culture GGAGCAGGAG (5) 11.4 0.0114 P8 GC+1d culture CCTTCTGCCT (7) 4.6 0.0046 P8 GC+1d culture GGGCTGGAAT (5) 3.4 0.0034 P8 GC+1d culture CTAGGCAAAC (7) 2.3 0.0023 P8 GC+1d culture AGGTAGAAGA (4) 1.1 0.0011 P8 GC+1d culture GAAAGGCCAG (5) 1.1 0.0011 P8 GC+SHH+1d culture CCAAAAAAAA (35) 39.8 0.0398 P8 GC+SHH+1d culture GGAGCAGGAG (5) 10.5 0.0105 P8 GC+SHH+1d culture GGGCTGGAAT (5) 5.9 0.0059 P8 GC+SHH+1d culture CCTTCTGCCT (7) 1.2 0.0012 P8 GC+SHH+1d culture CTAGGCAAAC (7) 1.2 0.0012 3T3 fibroblasts CCTTCTGCCT (7) 3.5 0.0035 3T3 fibroblasts CTAGGCAAAC (7) 3.5 0.0035 3T3 fibroblasts GAAAGGCCAG (5) 3.5 0.0035 3T3 fibroblasts GCACTGGGGA (2) 3.5 0.0035 3T3 fibroblasts GGAGCAGGAG (5) 3.5 0.0035 3T3 fibroblasts GGGCTGGAAT (5) 3.5 0.0035 3T3 fibroblasts GTCCAGGTGA (2) 3.5 0.0035 E15 cortex GGAGCAGGAG (5) 19.8 0.0198 E15 cortex CCAAAAAAAA (35) 9.9 0.0099 E15 cortex CTAGGCAAAC (7) 4.9 0.0049 E15 cortex GGGCTGGAAT (5) 4.9 0.0049 E15 cortex GTCCAGGTGA (2) 4.9 0.0049 P1 cortex CCAAAAAAAA (35) 40.9 0.0409 P1 cortex AGGTAGAAGA (4) 18.2 0.0182 P1 cortex CCTTCTGCCT (7) 13.6 0.0136 P1 cortex CTAGGCAAAC (7) 9.1 0.0091 P1 cortex GGAGCAGGAG (5) 9.1 0.0091 P1 cortex GGGCTGGAAT (5) 4.5 0.0045 Hypothalamus CCAAAAAAAA (35) 38 0.038 Hypothalamus GGAGCAGGAG (5) 14.5 0.0145 Hypothalamus GGGCTGGAAT (5) 9.1 0.0091 Hypothalamus CCTTCTGCCT (7) 1.8 0.0018 Hypothalamus GCACTGGGGA (2) 1.8 0.0018 E12.5 retina CCAAAAAAAA (35) 16.9 0.0169 E12.5 retina GGAGCAGGAG (5) 16.9 0.0169 E12.5 retina CCTTCTGCCT (7) 3.8 0.0038 E12.5 retina GAAAGGCCAG (5) 1.9 0.0019 E12.5 retina GCGGGGGGGG (18) 1.9 0.0019 E14.5 retina CCAAAAAAAA (35) 18.2 0.0182 E14.5 retina GGAGCAGGAG (5) 16.4 0.0164 E14.5 retina GGGCTGGAAT (5) 5.5 0.0055 E14.5 retina CCTTCTGCCT (7) 3.6 0.0036 E14.5 retina GGGGGGCTGG (8) 1.8 0.0018 E16.5 retina CCAAAAAAAA (35) 16.3 0.0163 E16.5 retina GGAGCAGGAG (5) 5.4 0.0054 E16.5 retina CCTTCTGCCT (7) 3.6 0.0036 E16.5 retina AGGTAGAAGA (4) 1.8 0.0018 E16.5 retina GAAAGGCCAG (5) 1.8 0.0018 E18.5 retina CCAAAAAAAA (35) 38.2 0.0382 E18.5 retina CCTTCTGCCT (7) 9.1 0.0091 E18.5 retina GGAGCAGGAG (5) 9.1 0.0091 E18.5 retina GGGCTGGAAT (5) 7.3 0.0073 E18.5 retina CTAGGCAAAC (7) 1.8 0.0018 E18.5 retina GCACTGGGGA (2) 1.8 0.0018 E18.5 retina GGGGGGCTGG (8) 1.8 0.0018 P0.5 retina CCAAAAAAAA (35) 29.4 0.0294 P0.5 retina GGAGCAGGAG (5) 19.6 0.0196 P0.5 retina CCTTCTGCCT (7) 2 0.002 P0.5 retina GAAAGGCCAG (5) 2 0.002 P0.5 retina GGGGGGCTGG (8) 2 0.002 P2.5 retina CCAAAAAAAA (35) 44 0.044 P2.5 retina GGAGCAGGAG (5) 10.6 0.0106 P2.5 retina CTAGGCAAAC (7) 3.5 0.0035 P2.5 retina GGGCTGGAAT (5) 3.5 0.0035 P2.5 retina CCTTCTGCCT (7) 1.8 0.0018 P2.5 retina GAAAGGCCAG (5) 1.8 0.0018 P4.5 retina CCAAAAAAAA (35) 39.6 0.0396 P4.5 retina GGAGCAGGAG (5) 17.8 0.0178 P4.5 retina GAAAGGCCAG (5) 2 0.002 P4.5 retina GTCCAGGTGA (2) 2 0.002 P6.5 retina CCAAAAAAAA (35) 38.3 0.0383 P6.5 retina GGAGCAGGAG (5) 26.7 0.0267 P6.5 retina CCTTCTGCCT (7) 3.3 0.0033 P6.5 retina AGGTAGAAGA (4) 1.7 0.0017 P6.5 retina GCGGGGGGGG (18) 1.7 0.0017 P10.5 crx- retina GGAGCAGGAG (5) 20.4 0.0204 P10.5 crx- retina CCAAAAAAAA (35) 14.9 0.0149 P10.5 crx- retina GGGCTGGAAT (5) 5.6 0.0056 P10.5 crx- retina CCTTCTGCCT (7) 1.9 0.0019 P10.5 crx- retina GAAAGGCCAG (5) 1.9 0.0019 P10.5 crx+ retina CCAAAAAAAA (35) 38.4 0.0384 P10.5 crx+ retina GGAGCAGGAG (5) 26.9 0.0269 P10.5 crx+ retina CCTTCTGCCT (7) 1.9 0.0019 P10.5 crx+ retina GAAAGGCCAG (5) 1.9 0.0019 P10.5 crx+ retina GCGGGGGGGG (18) 1.9 0.0019 Adult retinal GGAGCAGGAG (5) 37 0.037 Adult retinal CCAAAAAAAA (35) 35.2 0.0352 Adult retinal GGGCTGGAAT (5) 7.4 0.0074 Adult retinal CCTTCTGCCT (7) 1.9 0.0019 Adult retinal GTCCAGGTGA (2) 1.9 0.0019 ONL GGAGCAGGAG (5) 9.6 0.0096 ONL CCAAAAAAAA (35) 7.7 0.0077 ONL GGGCTGGAAT (5) 3.8 0.0038 ONL GGGGGGCTGG (8) 1.9 0.0019 ONL GTCCAGGTGA (2) 1.9 0.0019