Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.260227	Pak1	p21 (CDKN1A)-activated kinase 1	7	7 46.5 cM	18479
Gene Ontology	ATP binding | axon | cytoplasm | dendrite morphogenesis | focal adhesion | growth cone | nucleus | protein amino acid phosphorylation | protein binding | protein kinase activity | protein kinase activity | protein serine/threonine kinase activity | protein-tyrosine kinase activity | transferase activity
Human Homolog	PAK1[p21/Cdc42/Rac1-activated kinase 1 (STE20 homolog, yeast)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 80 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GATGCACCCC (3) 4.9 0.0049 P8 Cb GC GTTCTCCAAA (5) 4.9 0.0049 P8 Cb GC CTCAGAGGTC (3) 3.3 0.0033 P8 Cb GC CACTTAAAAA (3) 1.6 0.0016 Cb medulloblastoma CTCAGAGGTC (3) 18.5 0.0185 Cb medulloblastoma GTTCTCCAAA (5) 9.2 0.0092 Cb medulloblastoma CACTTAAAAA (3) 2.3 0.0023 Cb medulloblastoma GATGCACCCC (3) 2.3 0.0023 Cb medulloblastoma TATGAAACAT (2) 2.3 0.0023 Cb medulloblastoma TTGGTTTTGA (5) 2.3 0.0023 P8 GC+1d culture CTCAGAGGTC (3) 3.4 0.0034 P8 GC+1d culture GTTCTCCAAA (5) 3.4 0.0034 P8 GC+1d culture TATGAAACAT (2) 2.3 0.0023 P8 GC+1d culture TGCCAAGCCT (5) 2.3 0.0023 P8 GC+1d culture CACTTAAAAA (3) 1.1 0.0011 P8 GC+1d culture GAGGGAACTG (2) 1.1 0.0011 P8 GC+1d culture TTGGTTTTGA (5) 1.1 0.0011 P8 GC+SHH+1d culture GTTCTCCAAA (5) 10.5 0.0105 P8 GC+SHH+1d culture CTCAGAGGTC (3) 4.7 0.0047 P8 GC+SHH+1d culture GAGGGAACTG (2) 2.3 0.0023 P8 GC+SHH+1d culture TATGAAACAT (2) 2.3 0.0023 P8 GC+SHH+1d culture TGCCAAGCCT (5) 2.3 0.0023 3T3 fibroblasts GTTCTCCAAA (5) 3.5 0.0035 E15 cortex TGCCAAGCCT (5) 19.8 0.0198 E15 cortex GTTCTCCAAA (5) 9.9 0.0099 E15 cortex CTCAGAGGTC (3) 4.9 0.0049 P1 cortex CTCAGAGGTC (3) 13.6 0.0136 P1 cortex GTTCTCCAAA (5) 13.6 0.0136 Hypothalamus CTCAGAGGTC (3) 19.9 0.0199 Hypothalamus GTTCTCCAAA (5) 3.6 0.0036 Hypothalamus TAAAATGAAC (3) 1.8 0.0018 Hypothalamus TGCCAAGCCT (5) 1.8 0.0018 E12.5 retina CTCAGAGGTC (3) 3.8 0.0038 E12.5 retina GTTCTCCAAA (5) 3.8 0.0038 E12.5 retina GAGGGAACTG (2) 1.9 0.0019 E12.5 retina TGCCAAGCCT (5) 1.9 0.0019 E14.5 retina CTCAGAGGTC (3) 7.3 0.0073 E14.5 retina GAGGGAACTG (2) 1.8 0.0018 E14.5 retina GTTCTCCAAA (5) 1.8 0.0018 E14.5 retina TATGAAACAT (2) 1.8 0.0018 E14.5 retina TTGGTTTTGA (5) 1.8 0.0018 E16.5 retina TGCCAAGCCT (5) 7.2 0.0072 E16.5 retina CTCAGAGGTC (3) 5.4 0.0054 E16.5 retina GTTCTCCAAA (5) 1.8 0.0018 E18.5 retina GTTCTCCAAA (5) 12.7 0.0127 E18.5 retina CTCAGAGGTC (3) 5.5 0.0055 E18.5 retina TGCCAAGCCT (5) 3.6 0.0036 E18.5 retina CACTTAAAAA (3) 1.8 0.0018 E18.5 retina GATGCACCCC (3) 1.8 0.0018 E18.5 retina TAAAATGAAC (3) 1.8 0.0018 P0.5 retina GTTCTCCAAA (5) 5.9 0.0059 P0.5 retina TGCCAAGCCT (5) 3.9 0.0039 P0.5 retina CACTTAAAAA (3) 2 0.002 P0.5 retina CTCAGAGGTC (3) 2 0.002 P0.5 retina GATGCACCCC (3) 2 0.002 P2.5 retina GTTCTCCAAA (5) 8.8 0.0088 P2.5 retina CTCAGAGGTC (3) 7 0.007 P2.5 retina TGCCAAGCCT (5) 3.5 0.0035 P2.5 retina TAAAATGAAC (3) 1.8 0.0018 P2.5 retina TATGAAACAT (2) 1.8 0.0018 P4.5 retina GTTCTCCAAA (5) 11.9 0.0119 P4.5 retina TGCCAAGCCT (5) 5.9 0.0059 P4.5 retina CTCAGAGGTC (3) 4 0.004 P4.5 retina GAGGGAACTG (2) 2 0.002 P4.5 retina TAAAATGAAC (3) 2 0.002 P4.5 retina TATGAAACAT (2) 2 0.002 P6.5 retina GTTCTCCAAA (5) 8.3 0.0083 P6.5 retina CTCAGAGGTC (3) 6.7 0.0067 P6.5 retina TGCCAAGCCT (5) 3.3 0.0033 P10.5 crx- retina CTCAGAGGTC (3) 9.3 0.0093 P10.5 crx- retina GTTCTCCAAA (5) 7.4 0.0074 P10.5 crx- retina GATGCACCCC (3) 3.7 0.0037 P10.5 crx+ retina GTTCTCCAAA (5) 11.5 0.0115 P10.5 crx+ retina TAAAATGAAC (3) 1.9 0.0019 Adult retinal GTTCTCCAAA (5) 11.1 0.0111 Adult retinal CTCAGAGGTC (3) 5.6 0.0056 ONL GTTCTCCAAA (5) 7.7 0.0077 ONL GATGCACCCC (3) 1.9 0.0019 ONL TGCCAAGCCT (5) 1.9 0.0019 ONL TTGGTTTTGA (5) 1.9 0.0019