Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.260545	Syncrip	synaptotagmin binding, cytoplasmic RNA interacting protein	9		56403
Mm.260545	D9Ertd306e	DNA segment, Chr 9, ERATO Doi 306, expressed	9	9 50.0 cM	52203
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 91 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAAAAAAAAA (658) 203.9 0.2039 P8 Cb GC GCAAACAATC (3) 9.8 0.0098 P8 Cb GC GTATCTTAAT (4) 8.2 0.0082 P8 Cb GC TTTCTGGATA (5) 3.3 0.0033 P8 Cb GC CCTATTGGCA (2) 1.6 0.0016 P8 Cb GC TTTTAAAAAA (26) 1.6 0.0016 Cb medulloblastoma AAAAAAAAAA (658) 797.8 0.7978 Cb medulloblastoma TTTTAAAAAA (26) 9.2 0.0092 Cb medulloblastoma CTTCACCGTG (3) 4.6 0.0046 Cb medulloblastoma AAAAAAAACA (13) 2.3 0.0023 Cb medulloblastoma GTATCTTAAT (4) 2.3 0.0023 P8 GC+1d culture AAAAAAAAAA (658) 204.3 0.2043 P8 GC+1d culture GCAAACAATC (3) 4.6 0.0046 P8 GC+1d culture GTATCTTAAT (4) 3.4 0.0034 P8 GC+1d culture GTGGCTGGGT (9) 2.3 0.0023 P8 GC+1d culture TTTCTGGATA (5) 2.3 0.0023 P8 GC+1d culture TTTTAAAAAA (26) 2.3 0.0023 P8 GC+1d culture CTTCACCGTG (3) 1.1 0.0011 P8 GC+1d culture GCTCACACAG (6) 1.1 0.0011 P8 GC+SHH+1d culture AAAAAAAAAA (658) 278.7 0.2787 P8 GC+SHH+1d culture TTTTAAAAAA (26) 10.5 0.0105 P8 GC+SHH+1d culture GCAAACAATC (3) 7 0.007 P8 GC+SHH+1d culture CCTATTGGCA (2) 5.9 0.0059 P8 GC+SHH+1d culture GTATCTTAAT (4) 2.3 0.0023 P8 GC+SHH+1d culture CTTCACCGTG (3) 1.2 0.0012 3T3 fibroblasts AAAAAAAAAA (658) 28 0.028 3T3 fibroblasts GCTCACACAG (6) 10.5 0.0105 E15 cortex AAAAAAAAAA (658) 212.8 0.2128 E15 cortex GCAAACAATC (3) 4.9 0.0049 E15 cortex GTGGCTGGGT (9) 4.9 0.0049 P1 cortex AAAAAAAAAA (658) 245.4 0.2454 P1 cortex GTATCTTAAT (4) 4.5 0.0045 P1 cortex TTTTAAAAAA (26) 4.5 0.0045 Hypothalamus AAAAAAAAAA (658) 123.2 0.1232 Hypothalamus GCAAACAATC (3) 5.4 0.0054 Hypothalamus GCTCACACAG (6) 3.6 0.0036 Hypothalamus TTTTAAAAAA (26) 1.8 0.0018 E12.5 retina AAAAAAAAAA (658) 138.9 0.1389 E12.5 retina GCAAACAATC (3) 30 0.03 E12.5 retina CTTCACCGTG (3) 1.9 0.0019 E12.5 retina GTATCTTAAT (4) 1.9 0.0019 E12.5 retina TCTAATTTTC (3) 1.9 0.0019 E12.5 retina TTTTAAAAAA (26) 1.9 0.0019 E14.5 retina AAAAAAAAAA (658) 94.7 0.0947 E14.5 retina GCAAACAATC (3) 9.1 0.0091 E14.5 retina GTATCTTAAT (4) 5.5 0.0055 E14.5 retina TTTTAAAAAA (26) 3.6 0.0036 E14.5 retina TCTAATTTTC (3) 1.8 0.0018 E16.5 retina AAAAAAAAAA (658) 43.5 0.0435 E16.5 retina AAAAAAAACA (13) 1.8 0.0018 E16.5 retina GCAAACAATC (3) 1.8 0.0018 E18.5 retina AAAAAAAAAA (658) 374.7 0.3747 E18.5 retina GCAAACAATC (3) 12.7 0.0127 E18.5 retina TTTTAAAAAA (26) 9.1 0.0091 E18.5 retina AAAAAAAACA (13) 1.8 0.0018 P0.5 retina AAAAAAAAAA (658) 117.8 0.1178 P0.5 retina GTATCTTAAT (4) 2 0.002 P0.5 retina GTGGCTGGGT (9) 2 0.002 P0.5 retina TCTAATTTTC (3) 2 0.002 P0.5 retina TGGTGTACAC (5) 2 0.002 P0.5 retina TTTCTGGATA (5) 2 0.002 P2.5 retina AAAAAAAAAA (658) 329.1 0.3291 P2.5 retina GCAAACAATC (3) 7 0.007 P2.5 retina TTTTAAAAAA (26) 5.3 0.0053 P2.5 retina TTTCTGGATA (5) 3.5 0.0035 P2.5 retina GTGGCTGGGT (9) 1.8 0.0018 P4.5 retina AAAAAAAAAA (658) 283.3 0.2833 P4.5 retina GCAAACAATC (3) 17.8 0.0178 P4.5 retina TTTTAAAAAA (26) 4 0.004 P4.5 retina AAAAAAAACA (13) 2 0.002 P4.5 retina GCTCACACAG (6) 2 0.002 P6.5 retina AAAAAAAAAA (658) 266.8 0.2668 P6.5 retina GCAAACAATC (3) 6.7 0.0067 P6.5 retina TTTTAAAAAA (26) 5 0.005 P10.5 crx- retina AAAAAAAAAA (658) 44.6 0.0446 P10.5 crx- retina GTGGCTGGGT (9) 1.9 0.0019 P10.5 crx- retina TTTCTGGATA (5) 1.9 0.0019 P10.5 crx- retina TTTTAAAAAA (26) 1.9 0.0019 P10.5 crx+ retina AAAAAAAAAA (658) 96.1 0.0961 P10.5 crx+ retina GCAAACAATC (3) 3.8 0.0038 P10.5 crx+ retina AAAAAAAACA (13) 1.9 0.0019 P10.5 crx+ retina GTGGCTGGGT (9) 1.9 0.0019 P10.5 crx+ retina TTTTAAAAAA (26) 1.9 0.0019 Adult retinal AAAAAAAAAA (658) 57.4 0.0574 Adult retinal GTGGCTGGGT (9) 3.7 0.0037 Adult retinal GCAAACAATC (3) 1.9 0.0019 ONL AAAAAAAAAA (658) 103.4 0.1034 ONL GCAAACAATC (3) 5.7 0.0057 ONL TTTTAAAAAA (26) 3.8 0.0038 ONL AAAAAAAACA (13) 1.9 0.0019 ONL GTGGCTGGGT (9) 1.9 0.0019