Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.260594
2010313D22Rik
RIKEN cDNA 2010313D22 gene
5
67021
Mm.260594
2510002A14Rik
RIKEN cDNA 2510002A14 gene
5
5 C3.2
72313
Human Homolog
KIAA0826[KIAA0826]
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
Total 10 In Situ Hybridization Images
Images -- Click to Enlarge
SAGE Tags
Total 94 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
GTGGCGCACA (
11
)
8.2
0.0082
P8 Cb GC
CCTTATTGTG (
3
)
3.3
0.0033
P8 Cb GC
GCCCCCGACA
(
3
)
1.6
0.0016
P8 Cb GC
TTGACAGCCC (
3
)
1.6
0.0016
Cb medulloblastoma
GCCCCCGACA
(
3
)
11.6
0.0116
Cb medulloblastoma
GGAAAGGCAA (
7
)
6.9
0.0069
Cb medulloblastoma
CCTTATTGTG (
3
)
2.3
0.0023
Cb medulloblastoma
TGTGTGGGAG (
4
)
2.3
0.0023
P8 GC+1d culture
GGAAAGGCAA (
7
)
10.3
0.0103
P8 GC+1d culture
GCCCCCGACA
(
3
)
9.1
0.0091
P8 GC+1d culture
CCTTATTGTG (
3
)
5.7
0.0057
P8 GC+1d culture
GTGGCGCACA (
11
)
3.4
0.0034
P8 GC+1d culture
ATGCCCGAGC
(
2
)
1.1
0.0011
P8 GC+SHH+1d culture
CCTTATTGTG (
3
)
8.2
0.0082
P8 GC+SHH+1d culture
GCCCCCGACA
(
3
)
8.2
0.0082
P8 GC+SHH+1d culture
GGAAAGGCAA (
7
)
7
0.007
P8 GC+SHH+1d culture
GTGGCGCACA (
11
)
3.5
0.0035
P8 GC+SHH+1d culture
ATGCCCGAGC
(
2
)
2.3
0.0023
P8 GC+SHH+1d culture
TCCAAAGCTA
(
2
)
1.2
0.0012
3T3 fibroblasts
GTGGCGCACA (
11
)
28
0.028
3T3 fibroblasts
GCCCCCGACA
(
3
)
21
0.021
3T3 fibroblasts
ATGCCCGAGC
(
2
)
7
0.007
3T3 fibroblasts
CCTTATTGTG (
3
)
3.5
0.0035
E15 cortex
GTGGCGCACA (
11
)
44.5
0.0445
E15 cortex
GCCCCCGACA
(
3
)
9.9
0.0099
E15 cortex
CCATCTTCCA
(
2
)
4.9
0.0049
E15 cortex
CTCTGAGAAG (
6
)
4.9
0.0049
P1 cortex
CCTTATTGTG (
3
)
9.1
0.0091
P1 cortex
CTCTGAGAAG (
6
)
9.1
0.0091
P1 cortex
GCCCCCGACA
(
3
)
4.5
0.0045
P1 cortex
GTGGCGCACA (
11
)
4.5
0.0045
Hypothalamus
GCCCCCGACA
(
3
)
5.4
0.0054
Hypothalamus
GTGGCGCACA (
11
)
3.6
0.0036
Hypothalamus
ATGCCCGAGC
(
2
)
1.8
0.0018
Hypothalamus
CAATTTTTAT
(
2
)
1.8
0.0018
Hypothalamus
CCTTATTGTG (
3
)
1.8
0.0018
Hypothalamus
GGAAAGGCAA (
7
)
1.8
0.0018
Hypothalamus
TCCAAAGCTA
(
2
)
1.8
0.0018
E12.5 retina
CCTTATTGTG (
3
)
11.3
0.0113
E12.5 retina
GCCCCCGACA
(
3
)
3.8
0.0038
E12.5 retina
GTGGCGCACA (
11
)
3.8
0.0038
E12.5 retina
CTCTGAGAAG (
6
)
1.9
0.0019
E12.5 retina
GGAAAGGCAA (
7
)
1.9
0.0019
E12.5 retina
TTGACAGCCC (
3
)
1.9
0.0019
E14.5 retina
GTGGCGCACA (
11
)
10.9
0.0109
E14.5 retina
CCTTATTGTG (
3
)
3.6
0.0036
E14.5 retina
GCCCCCGACA
(
3
)
1.8
0.0018
E16.5 retina
GTGGCGCACA (
11
)
9.1
0.0091
E16.5 retina
GCCCCCGACA
(
3
)
7.2
0.0072
E16.5 retina
CCTTATTGTG (
3
)
5.4
0.0054
E16.5 retina
ATGCCCGAGC
(
2
)
1.8
0.0018
E16.5 retina
CCATCTTCCA
(
2
)
1.8
0.0018
E16.5 retina
TCCAAAGCTA
(
2
)
1.8
0.0018
E18.5 retina
CCTTATTGTG (
3
)
5.5
0.0055
E18.5 retina
GTGGCGCACA (
11
)
5.5
0.0055
E18.5 retina
GCCCCCGACA
(
3
)
3.6
0.0036
E18.5 retina
ATGCCCGAGC
(
2
)
1.8
0.0018
E18.5 retina
CAATTTTTAT
(
2
)
1.8
0.0018
P0.5 retina
CCTTATTGTG (
3
)
13.7
0.0137
P0.5 retina
GTGGCGCACA (
11
)
5.9
0.0059
P0.5 retina
GCCCCCGACA
(
3
)
3.9
0.0039
P0.5 retina
ATGCCCGAGC
(
2
)
2
0.002
P0.5 retina
TTGACAGCCC (
3
)
2
0.002
P2.5 retina
GCCCCCGACA
(
3
)
15.8
0.0158
P2.5 retina
GTGGCGCACA (
11
)
7
0.007
P2.5 retina
CCTTATTGTG (
3
)
1.8
0.0018
P2.5 retina
TTGACAGCCC (
3
)
1.8
0.0018
P4.5 retina
GCCCCCGACA
(
3
)
9.9
0.0099
P4.5 retina
GTGGCGCACA (
11
)
7.9
0.0079
P4.5 retina
CCTTATTGTG (
3
)
5.9
0.0059
P6.5 retina
GCCCCCGACA
(
3
)
20
0.02
P6.5 retina
GTGGCGCACA (
11
)
11.7
0.0117
P6.5 retina
CCTTATTGTG (
3
)
6.7
0.0067
P6.5 retina
CTCTGAGAAG (
6
)
1.7
0.0017
P6.5 retina
TGTGTGGGAG (
4
)
1.7
0.0017
P10.5 crx- retina
GCCCCCGACA
(
3
)
16.7
0.0167
P10.5 crx- retina
CCTTATTGTG (
3
)
7.4
0.0074
P10.5 crx- retina
GTGGCGCACA (
11
)
5.6
0.0056
P10.5 crx- retina
ATGCCCGAGC
(
2
)
1.9
0.0019
P10.5 crx+ retina
GCCCCCGACA
(
3
)
13.5
0.0135
P10.5 crx+ retina
GTGGCGCACA (
11
)
11.5
0.0115
P10.5 crx+ retina
CTCTGAGAAG (
6
)
5.8
0.0058
P10.5 crx+ retina
CCTTATTGTG (
3
)
3.8
0.0038
P10.5 crx+ retina
CCATCTTCCA
(
2
)
1.9
0.0019
Adult retinal
GCCCCCGACA
(
3
)
24.1
0.0241
Adult retinal
GTGGCGCACA (
11
)
22.2
0.0222
Adult retinal
CCTTATTGTG (
3
)
11.1
0.0111
Adult retinal
ATGCCCGAGC
(
2
)
3.7
0.0037
Adult retinal
CAATTTTTAT
(
2
)
1.9
0.0019
Adult retinal
TGTGTGGGAG (
4
)
1.9
0.0019
ONL
GTGGCGCACA (
11
)
13.4
0.0134
ONL
CCTTATTGTG (
3
)
11.5
0.0115
ONL
CTCTGAGAAG (
6
)
9.6
0.0096
ONL
GCCCCCGACA
(
3
)
9.6
0.0096
