Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.261045	2310003C21Rik	RIKEN cDNA 2310003C21 gene	12		69486
Mm.261045	AA536658	expressed sequence AA536658	12		104733
Mm.261045	5033425G24Rik	RIKEN cDNA 5033425G24 gene	12		75998
Mm.261045	2900009J20Rik	RIKEN cDNA 2900009J20 gene	12		72876
Mm.261045	Ppm1a	protein phosphatase 1A, magnesium dependent, alpha isoform	12		19042
Gene Ontology	catalytic activity | hydrolase activity | magnesium ion binding | manganese ion binding | phosphoprotein phosphatase activity | protein amino acid dephosphorylation | protein serine/threonine phosphatase activity | protein serine/threonine phosphatase complex
Human Homolog	PPM1A[protein phosphatase 1A (formerly 2C), magnesium-dependent, alpha isoform]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 139 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC ACTGGCTGGG (5) 14.7 0.0147 P8 Cb GC GTGCAGATAG (7) 3.3 0.0033 P8 Cb GC CAGACTTTGT (7) 1.6 0.0016 P8 Cb GC CCAGGCAAGC (14) 1.6 0.0016 P8 Cb GC TAGAAAATCA (10) 1.6 0.0016 P8 Cb GC TTGATAATAA (8) 1.6 0.0016 Cb medulloblastoma ACTGGCTGGG (5) 9.2 0.0092 Cb medulloblastoma GTGCAGATAG (7) 9.2 0.0092 Cb medulloblastoma CAGACTTTGT (7) 4.6 0.0046 Cb medulloblastoma GCAGAGTGTT (6) 2.3 0.0023 Cb medulloblastoma TAGAAAATCA (10) 2.3 0.0023 P8 GC+1d culture ACTGGCTGGG (5) 13.7 0.0137 P8 GC+1d culture GTGCAGATAG (7) 4.6 0.0046 P8 GC+1d culture TTGATAATAA (8) 3.4 0.0034 P8 GC+1d culture AATTACGGTT (5) 2.3 0.0023 P8 GC+1d culture CAGACTTTGT (7) 1.1 0.0011 P8 GC+1d culture CAGCTATGTG (5) 1.1 0.0011 P8 GC+1d culture CTTATTTTAT (9) 1.1 0.0011 P8 GC+1d culture TCTTGTTTGT (10) 1.1 0.0011 P8 GC+1d culture TTGCATTAGA (5) 1.1 0.0011 P8 GC+SHH+1d culture ACTGGCTGGG (5) 10.5 0.0105 P8 GC+SHH+1d culture CAGACTTTGT (7) 3.5 0.0035 P8 GC+SHH+1d culture TCTTGTTTGT (10) 2.3 0.0023 P8 GC+SHH+1d culture AATATACAGG (7) 1.2 0.0012 P8 GC+SHH+1d culture AATTACGGTT (5) 1.2 0.0012 P8 GC+SHH+1d culture CTTATTTTAT (9) 1.2 0.0012 P8 GC+SHH+1d culture GCTCAGGAGG (10) 1.2 0.0012 P8 GC+SHH+1d culture TGCTTTCTTC (7) 1.2 0.0012 3T3 fibroblasts ACTGGCTGGG (5) 10.5 0.0105 3T3 fibroblasts CAGACTTTGT (7) 10.5 0.0105 3T3 fibroblasts GTCATAGCTG (590) 10.5 0.0105 3T3 fibroblasts CCAGGCAAGC (14) 3.5 0.0035 E15 cortex ACTGGCTGGG (5) 24.7 0.0247 E15 cortex CAGACTTTGT (7) 9.9 0.0099 E15 cortex GCAGAGTGTT (6) 4.9 0.0049 E15 cortex GTCATAGCTG (590) 4.9 0.0049 P1 cortex ACTGGCTGGG (5) 13.6 0.0136 P1 cortex AAGAAAATCT (7) 4.5 0.0045 P1 cortex CAGACTTTGT (7) 4.5 0.0045 P1 cortex CTTATTTTAT (9) 4.5 0.0045 P1 cortex GTGCAGATAG (7) 4.5 0.0045 Hypothalamus GGGAACGAAG (8) 16.3 0.0163 Hypothalamus ACTGGCTGGG (5) 14.5 0.0145 Hypothalamus CAGACTTTGT (7) 14.5 0.0145 Hypothalamus TAGAAAATCA (10) 9.1 0.0091 Hypothalamus AGCAGTTTGA (6) 3.6 0.0036 Hypothalamus GCCTAAGAAG (5) 1.8 0.0018 E12.5 retina AATTACGGTT (5) 3.8 0.0038 E12.5 retina ACTGGCTGGG (5) 3.8 0.0038 E12.5 retina AGCAGTTTGA (6) 3.8 0.0038 E12.5 retina CAGACTTTGT (7) 1.9 0.0019 E12.5 retina CCAGGCAAGC (14) 1.9 0.0019 E12.5 retina CTGTGTCTGG (7) 1.9 0.0019 E12.5 retina GCAGAGTGTT (6) 1.9 0.0019 E12.5 retina GCTCAGGAGG (10) 1.9 0.0019 E14.5 retina ACTGGCTGGG (5) 14.6 0.0146 E14.5 retina CAGACTTTGT (7) 5.5 0.0055 E14.5 retina GTGCAGATAG (7) 3.6 0.0036 E14.5 retina TAGAAAATCA (10) 3.6 0.0036 E14.5 retina AAGAAAATCT (7) 1.8 0.0018 E14.5 retina AATATACAGG (7) 1.8 0.0018 E14.5 retina GCAGAGTGTT (6) 1.8 0.0018 E14.5 retina GGGAACGAAG (8) 1.8 0.0018 E14.5 retina TTGATAATAA (8) 1.8 0.0018 E16.5 retina CAGACTTTGT (7) 10.9 0.0109 E16.5 retina ACTGGCTGGG (5) 9.1 0.0091 E16.5 retina AGCAGTTTGA (6) 3.6 0.0036 E16.5 retina CTGTGTCTGG (7) 3.6 0.0036 E16.5 retina AAGAAAATCT (7) 1.8 0.0018 E16.5 retina CTTATTTTAT (9) 1.8 0.0018 E16.5 retina GTGCAGATAG (7) 1.8 0.0018 E18.5 retina ACTGGCTGGG (5) 14.6 0.0146 E18.5 retina CAGACTTTGT (7) 7.3 0.0073 E18.5 retina TAGAAAATCA (10) 3.6 0.0036 E18.5 retina GTGCAGATAG (7) 1.8 0.0018 E18.5 retina TCTTGTTTGT (10) 1.8 0.0018 E18.5 retina TGCACACAGT (7) 1.8 0.0018 E18.5 retina TTGATAATAA (8) 1.8 0.0018 P0.5 retina ACTGGCTGGG (5) 17.7 0.0177 P0.5 retina GTGCAGATAG (7) 5.9 0.0059 P0.5 retina AATTACGGTT (5) 3.9 0.0039 P0.5 retina GTCATAGCTG (590) 3.9 0.0039 P0.5 retina AGCAGTTTGA (6) 2 0.002 P0.5 retina CAGACTTTGT (7) 2 0.002 P0.5 retina TGCACACAGT (7) 2 0.002 P2.5 retina ACTGGCTGGG (5) 22.9 0.0229 P2.5 retina CAGACTTTGT (7) 5.3 0.0053 P2.5 retina GCAGAGTGTT (6) 3.5 0.0035 P2.5 retina TTGATAATAA (8) 3.5 0.0035 P2.5 retina AATTACGGTT (5) 1.8 0.0018 P2.5 retina CCAGGCAAGC (14) 1.8 0.0018 P2.5 retina CTGTGTCTGG (7) 1.8 0.0018 P2.5 retina GCTCAGGAGG (10) 1.8 0.0018 P2.5 retina GTCATAGCTG (590) 1.8 0.0018 P2.5 retina GTGCAGATAG (7) 1.8 0.0018 P4.5 retina ACTGGCTGGG (5) 7.9 0.0079 P4.5 retina CAGACTTTGT (7) 5.9 0.0059 P4.5 retina AGCAGTTTGA (6) 2 0.002 P4.5 retina CAGCTATGTG (5) 2 0.002 P4.5 retina CTTATTTTAT (9) 2 0.002 P4.5 retina GTCATAGCTG (590) 2 0.002 P4.5 retina GTGCAGATAG (7) 2 0.002 P4.5 retina TTGATAATAA (8) 2 0.002 P4.5 retina TTGCATTAGA (5) 2 0.002 P6.5 retina ACTGGCTGGG (5) 20 0.02 P6.5 retina CAGACTTTGT (7) 11.7 0.0117 P6.5 retina GCAGAGTGTT (6) 3.3 0.0033 P6.5 retina GTCATAGCTG (590) 3.3 0.0033 P6.5 retina TGCTTTCTTC (7) 3.3 0.0033 P6.5 retina AATTACGGTT (5) 1.7 0.0017 P6.5 retina AGCAGTTTGA (6) 1.7 0.0017 P6.5 retina CTGTGTCTGG (7) 1.7 0.0017 P6.5 retina GCCTAAGAAG (5) 1.7 0.0017 P6.5 retina GTGCAGATAG (7) 1.7 0.0017 P6.5 retina TTGATAATAA (8) 1.7 0.0017 P10.5 crx- retina ACTGGCTGGG (5) 27.9 0.0279 P10.5 crx- retina CAGCTATGTG (5) 5.6 0.0056 P10.5 crx- retina TAGAAAATCA (10) 3.7 0.0037 P10.5 crx- retina AATATACAGG (7) 1.9 0.0019 P10.5 crx- retina CAGACTTTGT (7) 1.9 0.0019 P10.5 crx- retina GTGCAGATAG (7) 1.9 0.0019 P10.5 crx- retina TTGCATTAGA (5) 1.9 0.0019 P10.5 crx+ retina ACTGGCTGGG (5) 36.5 0.0365 P10.5 crx+ retina CAGACTTTGT (7) 5.8 0.0058 P10.5 crx+ retina AATTACGGTT (5) 1.9 0.0019 P10.5 crx+ retina GTGCAGATAG (7) 1.9 0.0019 P10.5 crx+ retina TTGATAATAA (8) 1.9 0.0019 Adult retinal ACTGGCTGGG (5) 7.4 0.0074 Adult retinal AGCAGTTTGA (6) 3.7 0.0037 Adult retinal AATATACAGG (7) 1.9 0.0019 Adult retinal CAGACTTTGT (7) 1.9 0.0019 Adult retinal CAGCTATGTG (5) 1.9 0.0019 Adult retinal GCCTAAGAAG (5) 1.9 0.0019 Adult retinal GTCATAGCTG (590) 1.9 0.0019 ONL ACTGGCTGGG (5) 5.7 0.0057 ONL GTCATAGCTG (590) 5.7 0.0057 ONL TGCACACAGT (7) 3.8 0.0038 ONL CAGACTTTGT (7) 1.9 0.0019 ONL TTGATAATAA (8) 1.9 0.0019