Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.261218	Rnf3	ring finger protein 3	5		69587
Human Homolog	RNF3[ring finger protein 3]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 99 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TAATAAATAA (12) 19.6 0.0196 P8 Cb GC TGGTTGCTGA (15) 3.3 0.0033 P8 Cb GC CAGCGATTCT (3) 1.6 0.0016 P8 Cb GC CCATCCAGTG (5) 1.6 0.0016 P8 Cb GC CGTTTATTAG 1.6 0.0016 P8 Cb GC GTAAATATTT (6) 1.6 0.0016 P8 Cb GC GTGAAACCAA (4) 1.6 0.0016 Cb medulloblastoma TAATAAATAA (12) 6.9 0.0069 Cb medulloblastoma GTAATATTTA (5) 4.6 0.0046 Cb medulloblastoma AGACCCCATC (4) 2.3 0.0023 Cb medulloblastoma TGGTTGCTGA (15) 2.3 0.0023 P8 GC+1d culture TAATAAATAA (12) 32 0.032 P8 GC+1d culture CAGCGATTCT (3) 3.4 0.0034 P8 GC+1d culture CCATCCAGTG (5) 3.4 0.0034 P8 GC+1d culture GTCTCACACC 3.4 0.0034 P8 GC+1d culture GTGAAACCAA (4) 2.3 0.0023 P8 GC+1d culture CGTTTATTAG 1.1 0.0011 P8 GC+1d culture GTAATATTTA (5) 1.1 0.0011 P8 GC+SHH+1d culture TAATAAATAA (12) 32.8 0.0328 P8 GC+SHH+1d culture CAGCGATTCT (3) 3.5 0.0035 P8 GC+SHH+1d culture GTCTCACACC 3.5 0.0035 P8 GC+SHH+1d culture TGGTTGCTGA (15) 2.3 0.0023 P8 GC+SHH+1d culture AGAACAAAAG (7) 1.2 0.0012 P8 GC+SHH+1d culture AGACCCCATC (4) 1.2 0.0012 P8 GC+SHH+1d culture CCATCCAGTG (5) 1.2 0.0012 P8 GC+SHH+1d culture GTGAAACCAA (4) 1.2 0.0012 3T3 fibroblasts CCATCCAGTG (5) 7 0.007 3T3 fibroblasts TGGTTGCTGA (15) 7 0.007 E15 cortex TGGTTGCTGA (15) 4.9 0.0049 P1 cortex GTCTCACACC 4.5 0.0045 Hypothalamus TAATAAATAA (12) 43.5 0.0435 Hypothalamus CAGCGATTCT (3) 1.8 0.0018 Hypothalamus GTAAATATTT (6) 1.8 0.0018 Hypothalamus TGGTTGCTGA (15) 1.8 0.0018 E12.5 retina TAATAAATAA (12) 39.4 0.0394 E12.5 retina CAGCGATTCT (3) 7.5 0.0075 E12.5 retina AGACCCCATC (4) 3.8 0.0038 E12.5 retina CGTTTATTAG 1.9 0.0019 E12.5 retina TGGTTGCTGA (15) 1.9 0.0019 E14.5 retina TAATAAATAA (12) 60.1 0.0601 E14.5 retina TGGTTGCTGA (15) 21.9 0.0219 E14.5 retina CAGCGATTCT (3) 9.1 0.0091 E14.5 retina GTCTCACACC 3.6 0.0036 E14.5 retina AGAACAAAAG (7) 1.8 0.0018 E14.5 retina GTAATATTTA (5) 1.8 0.0018 E16.5 retina TAATAAATAA (12) 36.2 0.0362 E16.5 retina TGGTTGCTGA (15) 19.9 0.0199 E16.5 retina CAGCGATTCT (3) 10.9 0.0109 E16.5 retina AAAACAAAAG (14) 3.6 0.0036 E16.5 retina GTCTCACACC 3.6 0.0036 E18.5 retina TAATAAATAA (12) 92.8 0.0928 E18.5 retina CAGCGATTCT (3) 3.6 0.0036 E18.5 retina GTAATATTTA (5) 1.8 0.0018 E18.5 retina GTCTCACACC 1.8 0.0018 E18.5 retina TGGTTGCTGA (15) 1.8 0.0018 P0.5 retina TAATAAATAA (12) 27.5 0.0275 P0.5 retina CAGCGATTCT (3) 9.8 0.0098 P0.5 retina GTCTCACACC 3.9 0.0039 P0.5 retina AGACCCCATC (4) 2 0.002 P0.5 retina TGGTTGCTGA (15) 2 0.002 P2.5 retina TAATAAATAA (12) 72.2 0.0722 P2.5 retina CAGCGATTCT (3) 5.3 0.0053 P2.5 retina GTAATATTTA (5) 3.5 0.0035 P2.5 retina AGACCCCATC (4) 1.8 0.0018 P2.5 retina GTCTCACACC 1.8 0.0018 P2.5 retina TGGTTGCTGA (15) 1.8 0.0018 P4.5 retina TAATAAATAA (12) 77.3 0.0773 P4.5 retina TGGTTGCTGA (15) 5.9 0.0059 P4.5 retina CGTTTATTAG 4 0.004 P4.5 retina GTAAATATTT (6) 4 0.004 P4.5 retina GTGAAACCAA (4) 4 0.004 P4.5 retina CAGCGATTCT (3) 2 0.002 P4.5 retina CCATCCAGTG (5) 2 0.002 P4.5 retina GTCTCACACC 2 0.002 P6.5 retina TAATAAATAA (12) 68.4 0.0684 P6.5 retina TGGTTGCTGA (15) 8.3 0.0083 P6.5 retina GTAAATATTT (6) 3.3 0.0033 P6.5 retina GTAATATTTA (5) 3.3 0.0033 P6.5 retina AGAACAAAAG (7) 1.7 0.0017 P10.5 crx- retina TAATAAATAA (12) 11.1 0.0111 P10.5 crx- retina GTCTCACACC 3.7 0.0037 P10.5 crx- retina AAAACAAAAG (14) 1.9 0.0019 P10.5 crx- retina AGAACAAAAG (7) 1.9 0.0019 P10.5 crx- retina AGACCCCATC (4) 1.9 0.0019 P10.5 crx- retina TGGTTGCTGA (15) 1.9 0.0019 P10.5 crx+ retina TAATAAATAA (12) 15.4 0.0154 P10.5 crx+ retina AGACCCCATC (4) 3.8 0.0038 P10.5 crx+ retina TGGTTGCTGA (15) 3.8 0.0038 P10.5 crx+ retina CGTTTATTAG 1.9 0.0019 P10.5 crx+ retina GTGAAACCAA (4) 1.9 0.0019 Adult retinal TAATAAATAA (12) 5.6 0.0056 Adult retinal AGACCCCATC (4) 1.9 0.0019 Adult retinal CCATCCAGTG (5) 1.9 0.0019 Adult retinal GTAATATTTA (5) 1.9 0.0019 Adult retinal TGGTTGCTGA (15) 1.9 0.0019 ONL TAATAAATAA (12) 23 0.023 ONL TGGTTGCTGA (15) 11.5 0.0115 ONL AAAACAAAAG (14) 1.9 0.0019 ONL AGACCCCATC (4) 1.9 0.0019