Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.26135
C230066K19Rik
RIKEN cDNA C230066K19 gene
1
98529
Mm.26135
Cab39
calcium binding protein 39
1
12283
Gene Ontology
calcium ion binding
Human Homolog
CAB39[calcium binding protein 39]
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 52 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
AAAGTGTTTC
(
4
)
6.5
0.0065
P8 Cb GC
AAAATGCTGA
(
3
)
3.3
0.0033
P8 Cb GC
TCATTAAAAA (
8
)
1.6
0.0016
Cb medulloblastoma
AAAGTGTTTC
(
4
)
6.9
0.0069
Cb medulloblastoma
TCATTAAAAA (
8
)
2.3
0.0023
Cb medulloblastoma
TCATTAACAA
(
3
)
2.3
0.0023
P8 GC+1d culture
AAAGTGTTTC
(
4
)
6.8
0.0068
P8 GC+1d culture
TCATTAACAA
(
3
)
1.1
0.0011
P8 GC+SHH+1d culture
AAAGTGTTTC
(
4
)
4.7
0.0047
P8 GC+SHH+1d culture
TCATTAACAA
(
3
)
2.3
0.0023
P8 GC+SHH+1d culture
AAAATGCTGA
(
3
)
1.2
0.0012
P8 GC+SHH+1d culture
AAGTGTTCTT (
2
)
1.2
0.0012
3T3 fibroblasts
AAAGTGTTTC
(
4
)
3.5
0.0035
3T3 fibroblasts
TGCGTGCGTG
(
2
)
3.5
0.0035
E15 cortex
AAAGTGTTTC
(
4
)
9.9
0.0099
E15 cortex
TGCGTGCGTG
(
2
)
4.9
0.0049
P1 cortex
AAAGTGTTTC
(
4
)
9.1
0.0091
Hypothalamus
AAAGTGTTTC
(
4
)
5.4
0.0054
Hypothalamus
TGCGTGCGTG
(
2
)
5.4
0.0054
Hypothalamus
TCATTAACAA
(
3
)
3.6
0.0036
Hypothalamus
TCATTAAAAA (
8
)
1.8
0.0018
E12.5 retina
AAAGTGTTTC
(
4
)
7.5
0.0075
E12.5 retina
AAGTGTTCTT (
2
)
1.9
0.0019
E12.5 retina
TCATTAACAA
(
3
)
1.9
0.0019
E12.5 retina
TTCAGAACTC (
3
)
1.9
0.0019
E14.5 retina
TCATTAACAA
(
3
)
3.6
0.0036
E14.5 retina
AAAATGCTGA
(
3
)
1.8
0.0018
E14.5 retina
AAAGTGTTTC
(
4
)
1.8
0.0018
E14.5 retina
AAGTGTTCTT (
2
)
1.8
0.0018
E14.5 retina
TCATTAAAAA (
8
)
1.8
0.0018
E14.5 retina
TGCGTGCGTG
(
2
)
1.8
0.0018
E16.5 retina
AAAGTGTTTC
(
4
)
10.9
0.0109
E16.5 retina
TCATTAACAA
(
3
)
5.4
0.0054
E16.5 retina
TGCGTGCGTG
(
2
)
1.8
0.0018
E18.5 retina
AAAGTGTTTC
(
4
)
5.5
0.0055
E18.5 retina
TCATTAACAA
(
3
)
3.6
0.0036
E18.5 retina
AAAATGCTGA
(
3
)
1.8
0.0018
P0.5 retina
AAAGTGTTTC
(
4
)
2
0.002
P0.5 retina
TCATTAAAAA (
8
)
2
0.002
P2.5 retina
AAAGTGTTTC
(
4
)
7
0.007
P2.5 retina
TTCAGAACTC (
3
)
1.8
0.0018
P4.5 retina
AAAGTGTTTC
(
4
)
2
0.002
P6.5 retina
AAAGTGTTTC
(
4
)
5
0.005
P10.5 crx- retina
AAAGTGTTTC
(
4
)
5.6
0.0056
P10.5 crx+ retina
AAAGTGTTTC
(
4
)
7.7
0.0077
P10.5 crx+ retina
TTCAGAACTC (
3
)
1.9
0.0019
Adult retinal
AAAGTGTTTC
(
4
)
1.9
0.0019
Adult retinal
AAGTGTTCTT (
2
)
1.9
0.0019
Adult retinal
TCATTAACAA
(
3
)
1.9
0.0019
Adult retinal
TGCGTGCGTG
(
2
)
1.9
0.0019
ONL
AAAGTGTTTC
(
4
)
7.7
0.0077
ONL
TTCAGAACTC (
3
)
1.9
0.0019
