Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.261448	5830461H18Rik	RIKEN cDNA 5830461H18 gene	14		76108
Gene Ontology	GTP binding | small GTPase mediated signal transduction
Human Homolog	RAP2A[RAP2A, member of RAS oncogene family]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 93 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAAAAAAAAA (658) 203.9 0.2039 P8 Cb GC AATTGTCATT (2) 4.9 0.0049 P8 Cb GC TGCTGGGAAG (8) 3.3 0.0033 P8 Cb GC AATTCAATGA (2) 1.6 0.0016 P8 Cb GC AGAGAGAAAC 1.6 0.0016 Cb medulloblastoma AAAAAAAAAA (658) 797.8 0.7978 Cb medulloblastoma AGAGAGAAAC 4.6 0.0046 Cb medulloblastoma AATTGTCATT (2) 2.3 0.0023 Cb medulloblastoma CTGGCTTGTC 2.3 0.0023 Cb medulloblastoma TGCTGGGAAA (3) 2.3 0.0023 Cb medulloblastoma TGCTGGGAAG (8) 2.3 0.0023 P8 GC+1d culture AAAAAAAAAA (658) 204.3 0.2043 P8 GC+1d culture AATTGTCATT (2) 8 0.008 P8 GC+1d culture TGCTGGGAAG (8) 6.8 0.0068 P8 GC+1d culture CTGGCTTGTC 3.4 0.0034 P8 GC+1d culture AGGTGCTGAG 1.1 0.0011 P8 GC+1d culture GGGGTCCTCT (2) 1.1 0.0011 P8 GC+1d culture TTTCAATTGA 1.1 0.0011 P8 GC+SHH+1d culture AAAAAAAAAA (658) 278.7 0.2787 P8 GC+SHH+1d culture AATTGTCATT (2) 5.9 0.0059 P8 GC+SHH+1d culture TGCTGGGAAG (8) 5.9 0.0059 P8 GC+SHH+1d culture AGAGAGAAAC 2.3 0.0023 P8 GC+SHH+1d culture CTGGCTTGTC 2.3 0.0023 P8 GC+SHH+1d culture AGGTGCTGAG 1.2 0.0012 3T3 fibroblasts AAAAAAAAAA (658) 28 0.028 3T3 fibroblasts GTCATAGCTG (590) 10.5 0.0105 3T3 fibroblasts AGGTGCTGAG 7 0.007 3T3 fibroblasts CTGGCTTGTC 3.5 0.0035 E15 cortex AAAAAAAAAA (658) 212.8 0.2128 E15 cortex AGGTGCTGAG 24.7 0.0247 E15 cortex TGCTGGGAAG (8) 9.9 0.0099 E15 cortex GTCATAGCTG (590) 4.9 0.0049 P1 cortex AAAAAAAAAA (658) 245.4 0.2454 P1 cortex AATTCAATGA (2) 9.1 0.0091 P1 cortex CTGGCTTGTC 4.5 0.0045 P1 cortex TGCTGGGAAG (8) 4.5 0.0045 Hypothalamus AAAAAAAAAA (658) 123.2 0.1232 Hypothalamus TGCTGGGAAG (8) 7.2 0.0072 Hypothalamus TGCTGGGAAA (3) 3.6 0.0036 Hypothalamus AATTGTCATT (2) 1.8 0.0018 Hypothalamus AGGTGCTGAG 1.8 0.0018 E12.5 retina AAAAAAAAAA (658) 138.9 0.1389 E12.5 retina AATTGTCATT (2) 3.8 0.0038 E12.5 retina AGGTGCTGAG 3.8 0.0038 E14.5 retina AAAAAAAAAA (658) 94.7 0.0947 E14.5 retina AGGTGCTGAG 9.1 0.0091 E14.5 retina AATTGTCATT (2) 1.8 0.0018 E14.5 retina AGAGAGAAAC 1.8 0.0018 E16.5 retina AAAAAAAAAA (658) 43.5 0.0435 E16.5 retina AATTGTCATT (2) 7.2 0.0072 E16.5 retina TGCTGGGAAG (8) 3.6 0.0036 E16.5 retina TTTCAATTGA 1.8 0.0018 E18.5 retina AAAAAAAAAA (658) 374.7 0.3747 E18.5 retina AATTGTCATT (2) 1.8 0.0018 E18.5 retina TGCTGGGAAA (3) 1.8 0.0018 E18.5 retina TGCTGGGAAG (8) 1.8 0.0018 P0.5 retina AAAAAAAAAA (658) 117.8 0.1178 P0.5 retina TGCTGGGAAG (8) 7.9 0.0079 P0.5 retina GTCATAGCTG (590) 3.9 0.0039 P2.5 retina AAAAAAAAAA (658) 329.1 0.3291 P2.5 retina TGCTGGGAAG (8) 3.5 0.0035 P2.5 retina AGAGAGAAAC 1.8 0.0018 P2.5 retina CTGGCTTGTC 1.8 0.0018 P2.5 retina GGGGTCCTCT (2) 1.8 0.0018 P2.5 retina GTCATAGCTG (590) 1.8 0.0018 P4.5 retina AAAAAAAAAA (658) 283.3 0.2833 P4.5 retina AGGTGCTGAG 4 0.004 P4.5 retina TGCTGGGAAG (8) 4 0.004 P4.5 retina AATTGTCATT (2) 2 0.002 P4.5 retina GTCATAGCTG (590) 2 0.002 P6.5 retina AAAAAAAAAA (658) 266.8 0.2668 P6.5 retina AGGTGCTGAG 5 0.005 P6.5 retina AATTGTCATT (2) 3.3 0.0033 P6.5 retina GTCATAGCTG (590) 3.3 0.0033 P6.5 retina AGAGAGAAAC 1.7 0.0017 P6.5 retina TGCTGGGAAA (3) 1.7 0.0017 P6.5 retina TGCTGGGAAG (8) 1.7 0.0017 P10.5 crx- retina AAAAAAAAAA (658) 44.6 0.0446 P10.5 crx- retina TGCTGGGAAG (8) 11.1 0.0111 P10.5 crx- retina AATTGTCATT (2) 3.7 0.0037 P10.5 crx- retina GGGGTCCTCT (2) 1.9 0.0019 P10.5 crx+ retina AAAAAAAAAA (658) 96.1 0.0961 P10.5 crx+ retina TGCTGGGAAG (8) 11.5 0.0115 Adult retinal AAAAAAAAAA (658) 57.4 0.0574 Adult retinal TGCTGGGAAG (8) 11.1 0.0111 Adult retinal CTGGCTTGTC 3.7 0.0037 Adult retinal GTCATAGCTG (590) 1.9 0.0019 Adult retinal TTTCAATTGA 1.9 0.0019 ONL AAAAAAAAAA (658) 103.4 0.1034 ONL AGGTGCTGAG 11.5 0.0115 ONL TGCTGGGAAG (8) 7.7 0.0077 ONL GTCATAGCTG (590) 5.7 0.0057 ONL AATTGTCATT (2) 1.9 0.0019