Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.261570	6030441I21Rik	RIKEN cDNA 6030441I21 gene	5		114678
Mm.261570	Gtf2i	general transcription factor II I	5	5 75.0 cM	14886
Gene Ontology	DNA binding | nucleus | regulation of transcription, DNA-dependent | transcription factor activity | transcription factor complex
Human Homolog	GTF2I[general transcription factor II, i]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 185 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAAAAAAAAA (658) 203.9 0.2039 P8 Cb GC CAAAAAAAAA (157) 47.3 0.0473 P8 Cb GC GCAAAAAAAA (50) 14.7 0.0147 P8 Cb GC CCTTTCAAAA (7) 13.1 0.0131 P8 Cb GC AGGAGGATCT (4) 1.6 0.0016 P8 Cb GC CAAAAGAAAA (8) 1.6 0.0016 P8 Cb GC CCTTTCACAA (2) 1.6 0.0016 P8 Cb GC TCCCTTCAGA (11) 1.6 0.0016 P8 Cb GC TCTGGCCTCT (6) 1.6 0.0016 Cb medulloblastoma AAAAAAAAAA (658) 797.8 0.7978 Cb medulloblastoma CAAAAAAAAA (157) 92.5 0.0925 Cb medulloblastoma GCAAAAAAAA (50) 60.1 0.0601 Cb medulloblastoma CCTTTCAAAA (7) 9.2 0.0092 Cb medulloblastoma GGGGGGGGTT (9) 4.6 0.0046 Cb medulloblastoma AGCTTCTGAA (4) 2.3 0.0023 Cb medulloblastoma CATTGCTGTG (5) 2.3 0.0023 Cb medulloblastoma CTTTCAAAAA (3) 2.3 0.0023 Cb medulloblastoma TCTGGCCTCT (6) 2.3 0.0023 P8 GC+1d culture AAAAAAAAAA (658) 204.3 0.2043 P8 GC+1d culture CAAAAAAAAA (157) 37.7 0.0377 P8 GC+1d culture GCAAAAAAAA (50) 12.6 0.0126 P8 GC+1d culture AAATATATAT (9) 4.6 0.0046 P8 GC+1d culture CCTTTCAAAA (7) 3.4 0.0034 P8 GC+1d culture TCTGGCCTCT (6) 3.4 0.0034 P8 GC+1d culture CTTGAGCAGG (2) 2.3 0.0023 P8 GC+1d culture AAGTTTCAAG (4) 1.1 0.0011 P8 GC+1d culture CAAAAGAAAA (8) 1.1 0.0011 P8 GC+1d culture CAGACCTGAC (2) 1.1 0.0011 P8 GC+1d culture GATGGATTTT (2) 1.1 0.0011 P8 GC+1d culture TAAAACAAAA (2) 1.1 0.0011 P8 GC+SHH+1d culture AAAAAAAAAA (658) 278.7 0.2787 P8 GC+SHH+1d culture CAAAAAAAAA (157) 58.5 0.0585 P8 GC+SHH+1d culture GCAAAAAAAA (50) 29.3 0.0293 P8 GC+SHH+1d culture CCTTTCAAAA (7) 12.9 0.0129 P8 GC+SHH+1d culture AAATATATAT (9) 3.5 0.0035 P8 GC+SHH+1d culture CAAAAGAAAA (8) 2.3 0.0023 P8 GC+SHH+1d culture CAGTTTGTAC (7) 2.3 0.0023 P8 GC+SHH+1d culture CTTGAGCAGG (2) 2.3 0.0023 P8 GC+SHH+1d culture CTTTCAAAAA (3) 2.3 0.0023 P8 GC+SHH+1d culture AAGTTTCAAG (4) 1.2 0.0012 P8 GC+SHH+1d culture AGCTTCTGAA (4) 1.2 0.0012 P8 GC+SHH+1d culture CATTGCTGTG (5) 1.2 0.0012 P8 GC+SHH+1d culture TCTGGCCTCT (6) 1.2 0.0012 3T3 fibroblasts AAAAAAAAAA (658) 28 0.028 3T3 fibroblasts GCAAAAAAAA (50) 3.5 0.0035 3T3 fibroblasts TCCCTTCAGA (11) 3.5 0.0035 3T3 fibroblasts TCTGGCCTCT (6) 3.5 0.0035 E15 cortex AAAAAAAAAA (658) 212.8 0.2128 E15 cortex CAAAAAAAAA (157) 34.6 0.0346 E15 cortex CCTTTCAAAA (7) 9.9 0.0099 E15 cortex GCAAAAAAAA (50) 9.9 0.0099 E15 cortex TCTGGCCTCT (6) 4.9 0.0049 P1 cortex AAAAAAAAAA (658) 245.4 0.2454 P1 cortex CAAAAAAAAA (157) 22.7 0.0227 P1 cortex AAATATATAT (9) 4.5 0.0045 P1 cortex CAAAAGAAAA (8) 4.5 0.0045 P1 cortex CTTCAAAAAA (6) 4.5 0.0045 P1 cortex CTTGAGCAGG (2) 4.5 0.0045 P1 cortex GCAAAAAAAA (50) 4.5 0.0045 Hypothalamus AAAAAAAAAA (658) 123.2 0.1232 Hypothalamus CAAAAAAAAA (157) 39.8 0.0398 Hypothalamus GCAAAAAAAA (50) 19.9 0.0199 Hypothalamus CCTTTCAAAA (7) 9.1 0.0091 Hypothalamus CAGTTTGTAC (7) 5.4 0.0054 Hypothalamus TCTGGCCTCT (6) 3.6 0.0036 Hypothalamus GATGGATTTT (2) 1.8 0.0018 Hypothalamus GGGGGGGGTT (9) 1.8 0.0018 E12.5 retina AAAAAAAAAA (658) 138.9 0.1389 E12.5 retina CAAAAAAAAA (157) 22.5 0.0225 E12.5 retina CCTTTCAAAA (7) 11.3 0.0113 E12.5 retina GCAAAAAAAA (50) 9.4 0.0094 E12.5 retina CCCTTTCAAA (5) 5.6 0.0056 E12.5 retina TCTGGCCTCT (6) 5.6 0.0056 E12.5 retina AAATATATAT (9) 1.9 0.0019 E12.5 retina AAGTTTCAAG (4) 1.9 0.0019 E14.5 retina AAAAAAAAAA (658) 94.7 0.0947 E14.5 retina CCTTTCAAAA (7) 20 0.02 E14.5 retina GCAAAAAAAA (50) 12.8 0.0128 E14.5 retina CAAAAAAAAA (157) 9.1 0.0091 E14.5 retina TCTGGCCTCT (6) 7.3 0.0073 E14.5 retina AAATATATAT (9) 5.5 0.0055 E14.5 retina CCCTTTCAAA (5) 3.6 0.0036 E14.5 retina ACATCATAAA (3) 1.8 0.0018 E14.5 retina CCTTTCACAA (2) 1.8 0.0018 E14.5 retina CTTCAAAAAA (6) 1.8 0.0018 E16.5 retina AAAAAAAAAA (658) 43.5 0.0435 E16.5 retina GCAAAAAAAA (50) 10.9 0.0109 E16.5 retina CAAAAAAAAA (157) 9.1 0.0091 E16.5 retina CCTTTCAAAA (7) 9.1 0.0091 E16.5 retina AAGTTTCAAG (4) 5.4 0.0054 E16.5 retina TCTGGCCTCT (6) 3.6 0.0036 E16.5 retina ATTACGCCAA (233) 1.8 0.0018 E16.5 retina CAGACCTGAC (2) 1.8 0.0018 E16.5 retina CAGTTTGTAC (7) 1.8 0.0018 E16.5 retina CTTCAAAAAA (6) 1.8 0.0018 E16.5 retina GATGGATTTT (2) 1.8 0.0018 E16.5 retina GTGAGATTCT (2) 1.8 0.0018 E18.5 retina AAAAAAAAAA (658) 374.7 0.3747 E18.5 retina CAAAAAAAAA (157) 41.8 0.0418 E18.5 retina CCTTTCAAAA (7) 25.5 0.0255 E18.5 retina GCAAAAAAAA (50) 25.5 0.0255 E18.5 retina TCTGGCCTCT (6) 7.3 0.0073 E18.5 retina AAATATATAT (9) 3.6 0.0036 E18.5 retina CTTCAAAAAA (6) 1.8 0.0018 E18.5 retina GATGGATTTT (2) 1.8 0.0018 E18.5 retina TAAAACAAAA (2) 1.8 0.0018 P0.5 retina CAAAAAAAAA (157) 137.4 0.1374 P0.5 retina AAAAAAAAAA (658) 117.8 0.1178 P0.5 retina GCAAAAAAAA (50) 17.7 0.0177 P0.5 retina CCTTTCAAAA (7) 5.9 0.0059 P0.5 retina CAGACCTGAC (2) 3.9 0.0039 P0.5 retina ATTACGCCAA (233) 2 0.002 P0.5 retina CTTCAAAAAA (6) 2 0.002 P0.5 retina CTTGAGCAGG (2) 2 0.002 P2.5 retina AAAAAAAAAA (658) 329.1 0.3291 P2.5 retina CAAAAAAAAA (157) 52.8 0.0528 P2.5 retina GCAAAAAAAA (50) 22.9 0.0229 P2.5 retina TCTGGCCTCT (6) 12.3 0.0123 P2.5 retina CCTTTCAAAA (7) 10.6 0.0106 P2.5 retina CCCTTTCAAA (5) 1.8 0.0018 P2.5 retina CTTCAAAAAA (6) 1.8 0.0018 P4.5 retina AAAAAAAAAA (658) 283.3 0.2833 P4.5 retina CAAAAAAAAA (157) 41.6 0.0416 P4.5 retina GCAAAAAAAA (50) 25.8 0.0258 P4.5 retina CCTTTCAAAA (7) 13.9 0.0139 P4.5 retina AAATATATAT (9) 4 0.004 P4.5 retina GATGGATTTT (2) 4 0.004 P4.5 retina AAGTTTCAAG (4) 2 0.002 P4.5 retina ACATCATAAA (3) 2 0.002 P4.5 retina AGCTTCTGAA (4) 2 0.002 P4.5 retina CCCTTTCAAA (5) 2 0.002 P4.5 retina CCTTTCACAA (2) 2 0.002 P4.5 retina TAAAACAAAA (2) 2 0.002 P4.5 retina TCTGGCCTCT (6) 2 0.002 P6.5 retina AAAAAAAAAA (658) 266.8 0.2668 P6.5 retina CAAAAAAAAA (157) 31.7 0.0317 P6.5 retina CCTTTCAAAA (7) 11.7 0.0117 P6.5 retina GCAAAAAAAA (50) 11.7 0.0117 P6.5 retina ACATCATAAA (3) 1.7 0.0017 P6.5 retina AGGAGGATCT (4) 1.7 0.0017 P6.5 retina CAGACCTGAC (2) 1.7 0.0017 P6.5 retina CAGTTTGTAC (7) 1.7 0.0017 P6.5 retina CATTGCTGTG (5) 1.7 0.0017 P6.5 retina GATGGATTTT (2) 1.7 0.0017 P6.5 retina TCTGGCCTCT (6) 1.7 0.0017 P10.5 crx- retina AAAAAAAAAA (658) 44.6 0.0446 P10.5 crx- retina CAAAAAAAAA (157) 13 0.013 P10.5 crx- retina GGAGGTTTCA (5) 11.1 0.0111 P10.5 crx- retina TCTGGCCTCT (6) 9.3 0.0093 P10.5 crx- retina CCTTTCAAAA (7) 7.4 0.0074 P10.5 crx- retina AAATATATAT (9) 5.6 0.0056 P10.5 crx- retina GCAAAAAAAA (50) 5.6 0.0056 P10.5 crx- retina AAGTTTCAAG (4) 3.7 0.0037 P10.5 crx- retina GATGGATTTT (2) 3.7 0.0037 P10.5 crx- retina CAGACCTGAC (2) 1.9 0.0019 P10.5 crx- retina CAGTTTGTAC (7) 1.9 0.0019 P10.5 crx- retina CATTGCTGTG (5) 1.9 0.0019 P10.5 crx- retina CTTGAGCAGG (2) 1.9 0.0019 P10.5 crx+ retina AAAAAAAAAA (658) 96.1 0.0961 P10.5 crx+ retina CAAAAAAAAA (157) 32.7 0.0327 P10.5 crx+ retina GGAGGTTTCA (5) 13.5 0.0135 P10.5 crx+ retina CCTTTCAAAA (7) 7.7 0.0077 P10.5 crx+ retina CAGTTTGTAC (7) 3.8 0.0038 P10.5 crx+ retina AAATATATAT (9) 1.9 0.0019 P10.5 crx+ retina CAGACCTGAC (2) 1.9 0.0019 P10.5 crx+ retina GCAAAAAAAA (50) 1.9 0.0019 Adult retinal AAAAAAAAAA (658) 57.4 0.0574 Adult retinal CAAAAAAAAA (157) 20.4 0.0204 Adult retinal GGAGGTTTCA (5) 13 0.013 Adult retinal GCAAAAAAAA (50) 11.1 0.0111 Adult retinal ATTACGCCAA (233) 3.7 0.0037 Adult retinal CCTTTCAAAA (7) 3.7 0.0037 Adult retinal GTGAGATTCT (2) 3.7 0.0037 Adult retinal CAGTTTGTAC (7) 1.9 0.0019 Adult retinal CCCTTTCAAA (5) 1.9 0.0019 Adult retinal CTTGAGCAGG (2) 1.9 0.0019 ONL AAAAAAAAAA (658) 103.4 0.1034 ONL CAAAAAAAAA (157) 17.2 0.0172 ONL CCTTTCAAAA (7) 7.7 0.0077 ONL GGAGGTTTCA (5) 3.8 0.0038 ONL AGGAGGATCT (4) 1.9 0.0019 ONL CTTCAAAAAA (6) 1.9 0.0019 ONL GATGGATTTT (2) 1.9 0.0019 ONL GCAAAAAAAA (50) 1.9 0.0019 ONL GGGGGGGGTT (9) 1.9 0.0019