Mouse Retina SAGE Library

[Home]    [Libraries]    [Images]

---

Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

---

UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.262021	Rpl6	ribosomal protein L6	5		19988
Gene Ontology	cytosolic ribosome (sensu Eukarya) | intracellular | protein biosynthesis | ribosome | ribosome biogenesis | structural constituent of ribosome
Human Homolog	RPL6[ribosomal protein L6]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 143 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CCTTTAATCC (355) 52.2 0.0522 P8 Cb GC GGTGGGGGGG (15) 27.7 0.0277 P8 Cb GC TGCACACACA (29) 8.2 0.0082 P8 Cb GC GTTAAAAAAA (26) 4.9 0.0049 P8 Cb GC TCTGAGACAG (3) 4.9 0.0049 P8 Cb GC ATTCCGAATT (107) 1.6 0.0016 P8 Cb GC CACTCACAAG 1.6 0.0016 P8 Cb GC GCCACTCTAC (2) 1.6 0.0016 P8 Cb GC GGTTTGGATT 1.6 0.0016 P8 Cb GC GTGCCACATT (3) 1.6 0.0016 Cb medulloblastoma CCTTTAATCC (355) 41.6 0.0416 Cb medulloblastoma GTTAAAAAAA (26) 25.4 0.0254 Cb medulloblastoma GGTGGGGGGG (15) 23.1 0.0231 Cb medulloblastoma GTGCCACATT (3) 4.6 0.0046 Cb medulloblastoma GCAAGAAGCC (7) 2.3 0.0023 Cb medulloblastoma TGCACACACA (29) 2.3 0.0023 P8 GC+1d culture CCTTTAATCC (355) 32 0.032 P8 GC+1d culture GGTGGGGGGG (15) 18.3 0.0183 P8 GC+1d culture GTTAAAAAAA (26) 13.7 0.0137 P8 GC+1d culture TGCACACACA (29) 9.1 0.0091 P8 GC+1d culture GTGCCACATT (3) 3.4 0.0034 P8 GC+1d culture TCTGAGACAG (3) 3.4 0.0034 P8 GC+1d culture CAGAGAACGC (3) 2.3 0.0023 P8 GC+1d culture GCAAGAAGCC (7) 1.1 0.0011 P8 GC+1d culture GCCACTCTAC (2) 1.1 0.0011 P8 GC+SHH+1d culture CCTTTAATCC (355) 25.8 0.0258 P8 GC+SHH+1d culture GGTGGGGGGG (15) 17.6 0.0176 P8 GC+SHH+1d culture GTTAAAAAAA (26) 16.4 0.0164 P8 GC+SHH+1d culture TGCACACACA (29) 16.4 0.0164 P8 GC+SHH+1d culture CAGAGAACGC (3) 1.2 0.0012 P8 GC+SHH+1d culture GCAAGAAGCC (7) 1.2 0.0012 P8 GC+SHH+1d culture GCCACTCTAC (2) 1.2 0.0012 P8 GC+SHH+1d culture GGTGTGGGGG (9) 1.2 0.0012 P8 GC+SHH+1d culture TCTGAGACAG (3) 1.2 0.0012 3T3 fibroblasts CCTTTAATCC (355) 70.1 0.0701 3T3 fibroblasts GCCACTCTAC (2) 14 0.014 3T3 fibroblasts TGCACACACA (29) 14 0.014 3T3 fibroblasts GGTGGGGGGG (15) 10.5 0.0105 3T3 fibroblasts GCCTCTGGCA (3) 7 0.007 3T3 fibroblasts GTGCCACATT (3) 3.5 0.0035 E15 cortex CCTTTAATCC (355) 54.4 0.0544 E15 cortex GGTGGGGGGG (15) 39.6 0.0396 E15 cortex TCTGAGACAG (3) 4.9 0.0049 P1 cortex CCTTTAATCC (355) 154.5 0.1545 P1 cortex GGTGGGGGGG (15) 9.1 0.0091 P1 cortex GTTAAAAAAA (26) 4.5 0.0045 P1 cortex TCTGAGACAG (3) 4.5 0.0045 P1 cortex TGCACACACA (29) 4.5 0.0045 Hypothalamus CCTTTAATCC (355) 19.9 0.0199 Hypothalamus GGTGGGGGGG (15) 10.9 0.0109 Hypothalamus GTTAAAAAAA (26) 9.1 0.0091 Hypothalamus TGCACACAAA 1.8 0.0018 Hypothalamus TGCACACACA (29) 1.8 0.0018 E12.5 retina CCTTTAATCC (355) 75.1 0.0751 E12.5 retina GGTGGGGGGG (15) 11.3 0.0113 E12.5 retina TGCACACACA (29) 5.6 0.0056 E12.5 retina GTTAAAAAAA (26) 3.8 0.0038 E12.5 retina CAGAGAACGC (3) 1.9 0.0019 E12.5 retina GCCACTCTAC (2) 1.9 0.0019 E12.5 retina GGTGTGGGGG (9) 1.9 0.0019 E12.5 retina GGTTTGGATT 1.9 0.0019 E12.5 retina TGCACACAAA 1.9 0.0019 E14.5 retina CCTTTAATCC (355) 120.3 0.1203 E14.5 retina GTTAAAAAAA (26) 20 0.02 E14.5 retina TGCACACACA (29) 9.1 0.0091 E14.5 retina GGTGGGGGGG (15) 5.5 0.0055 E14.5 retina TCTGAGACAG (3) 3.6 0.0036 E14.5 retina AGCAAAGCCC (2) 1.8 0.0018 E14.5 retina CACTCACAAG 1.8 0.0018 E16.5 retina CCTTTAATCC (355) 68.8 0.0688 E16.5 retina GTTAAAAAAA (26) 16.3 0.0163 E16.5 retina TGCACACACA (29) 9.1 0.0091 E16.5 retina GGTGGGGGGG (15) 5.4 0.0054 E16.5 retina CAGAGAACGC (3) 3.6 0.0036 E16.5 retina CACTCACAAG 1.8 0.0018 E16.5 retina TGCACACAAA 1.8 0.0018 E18.5 retina GTTAAAAAAA (26) 27.3 0.0273 E18.5 retina CCTTTAATCC (355) 23.6 0.0236 E18.5 retina GGTGGGGGGG (15) 14.6 0.0146 E18.5 retina TGCACACACA (29) 7.3 0.0073 E18.5 retina CAGAGAACGC (3) 1.8 0.0018 E18.5 retina TCTGAGACAG (3) 1.8 0.0018 P0.5 retina CCTTTAATCC (355) 72.6 0.0726 P0.5 retina GGTGGGGGGG (15) 19.6 0.0196 P0.5 retina GCTTCAGCCT 3.9 0.0039 P0.5 retina GTGCCACATT (3) 3.9 0.0039 P0.5 retina GTTAAAAAAA (26) 3.9 0.0039 P0.5 retina TCTGAGACAG (3) 2 0.002 P0.5 retina TGCACACACA (29) 2 0.002 P2.5 retina CCTTTAATCC (355) 70.4 0.0704 P2.5 retina GGTGGGGGGG (15) 24.6 0.0246 P2.5 retina GTTAAAAAAA (26) 7 0.007 P2.5 retina TGCACACACA (29) 3.5 0.0035 P2.5 retina GTGCCACATT (3) 1.8 0.0018 P2.5 retina TCTGAGACAG (3) 1.8 0.0018 P4.5 retina CCTTTAATCC (355) 43.6 0.0436 P4.5 retina GGTGGGGGGG (15) 15.9 0.0159 P4.5 retina GTTAAAAAAA (26) 11.9 0.0119 P4.5 retina ATTCCGAATT (107) 2 0.002 P4.5 retina GCCACTCTAC (2) 2 0.002 P4.5 retina GCCTCTGGCA (3) 2 0.002 P4.5 retina GCTTCAGCCT 2 0.002 P4.5 retina GGTGTGGGGG (9) 2 0.002 P4.5 retina GGTTTGGATT 2 0.002 P4.5 retina TGCACACACA (29) 2 0.002 P6.5 retina CCTTTAATCC (355) 70 0.07 P6.5 retina GGTGGGGGGG (15) 15 0.015 P6.5 retina GTTAAAAAAA (26) 15 0.015 P6.5 retina TGCACACACA (29) 11.7 0.0117 P6.5 retina ATTCCGAATT (107) 3.3 0.0033 P6.5 retina GCCACTCTAC (2) 1.7 0.0017 P6.5 retina GTGCCACATT (3) 1.7 0.0017 P10.5 crx- retina CCTTTAATCC (355) 63.2 0.0632 P10.5 crx- retina GGTGGGGGGG (15) 13 0.013 P10.5 crx- retina GTTAAAAAAA (26) 5.6 0.0056 P10.5 crx- retina GCCACTCTAC (2) 3.7 0.0037 P10.5 crx- retina GTGCCACATT (3) 3.7 0.0037 P10.5 crx- retina TCTGAGACAG (3) 3.7 0.0037 P10.5 crx- retina TGCACACACA (29) 3.7 0.0037 P10.5 crx- retina GCAAGAAGCC (7) 1.9 0.0019 P10.5 crx- retina GGTTTGGATT 1.9 0.0019 P10.5 crx+ retina CCTTTAATCC (355) 38.4 0.0384 P10.5 crx+ retina GGTGGGGGGG (15) 30.8 0.0308 P10.5 crx+ retina GTTAAAAAAA (26) 15.4 0.0154 P10.5 crx+ retina TGCACACACA (29) 9.6 0.0096 P10.5 crx+ retina GCCACTCTAC (2) 1.9 0.0019 P10.5 crx+ retina GGTGTGGGGG (9) 1.9 0.0019 P10.5 crx+ retina GTGCCACATT (3) 1.9 0.0019 Adult retinal CCTTTAATCC (355) 129.6 0.1296 Adult retinal GGTGGGGGGG (15) 13 0.013 Adult retinal TGCACACACA (29) 9.3 0.0093 Adult retinal TCTGAGACAG (3) 3.7 0.0037 Adult retinal GCTTCAGCCT 1.9 0.0019 Adult retinal GTGCCACATT (3) 1.9 0.0019 Adult retinal TGCACACAAA 1.9 0.0019 ONL CCTTTAATCC (355) 84.3 0.0843 ONL GGTGGGGGGG (15) 15.3 0.0153 ONL TGCACACACA (29) 15.3 0.0153 ONL ATTCCGAATT (107) 3.8 0.0038 ONL GCTTCAGCCT 3.8 0.0038 ONL GTTAAAAAAA (26) 3.8 0.0038 ONL AGCAAAGCCC (2) 1.9 0.0019 ONL GCCACTCTAC (2) 1.9 0.0019