Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.262059	Cbx5	chromobox homolog 5 (Drosophila HP1a)	15		12419
Gene Ontology	chromatin | chromatin assembly/disassembly | chromatin binding | kinetochore | nuclear heterochromatin | nucleus | protein binding
Human Homolog	CBX5[chromobox homolog 5 (HP1 alpha homolog, Drosophila)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 54 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CCAGGCAAGT (3) CCTGGTTCCC CTCCGATGCC GCTTGTGGAT (2) GGAAAGAAGA (2) TGGTTTCTGG (2) 9.6 0.0096 Cb medulloblastoma GCTTGTGGAT (2) 2.3 0.0023 P8 GC+1d culture AACCCACATT (4) GCTACATAGA (2) TGGTTTCTGG (2) 5.7 0.0057 P8 GC+SHH+1d culture CCAGGCAAGT (3) CTCCGATGCC TGGTTTCTGG (2) 7 0.007 3T3 fibroblasts AACCCACATT (4) GTTAAGGGGC TGGTTTCTGG (2) 14 0.014 E15 cortex CCAGGCAAGT (3) GGAAAGAAGA (2) GTTAAGGGGC 24.7 0.0247 P1 cortex AACCCACATT (4) TGGTTTCTGG (2) 9 0.009 Hypothalamus TGGTTTCTGG (2) 1.8 0.0018 E12.5 retina AACCCACATT (4) CCTGGTTCCC CTCCGATGCC GCTACATAGA (2) GTCATCATTA (2) TGGTTTCTGG (2) 20.8 0.0208 E14.5 retina TGGTTTCTGG (2) 9.1 0.0091 E16.5 retina TGGTTTCTGG (2) 18.1 0.0181 E18.5 retina CCAGGCAAGT (3) GCTACATAGA (2) GCTTGTGGAT (2) GTCATCATTA (2) TGGTTTCTGG (2) 9 0.009 P0.5 retina CCTGGTTCCC GCTACATAGA (2) GTTAAGGGGC TGGTTTCTGG (2) 9.9 0.0099 P2.5 retina AACCCACATT (4) TGGTTTCTGG (2) 10.5 0.0105 P4.5 retina CCTGGTTCCC GTCATCATTA (2) TGGTTTCTGG (2) 10 0.01 P6.5 retina GCTACATAGA (2) GGAAAGAAGA (2) GTCATCATTA (2) 6.7 0.0067 P10.5 crx- retina TGGTTTCTGG (2) 3.7 0.0037 P10.5 crx+ retina GCTACATAGA (2) TGGTTTCTGG (2) 3.8 0.0038 Adult retinal CCAGGCAAGT (3) GTTAAGGGGC 3.8 0.0038 ONL GCTACATAGA (2) TGGTTTCTGG (2) 11.5 0.0115