Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.262294	AW556556	expressed sequence AW556556	17		106817
Mm.262294	Dep1	diabetic embryopathy 1	17		170624
Mm.262294	Qk	quaking	17	17 5.9 cM	19317
Gene Ontology	cytoplasm | locomotory behavior | muscle cell differentiation | nerve ensheathment | nucleic acid binding | nucleus | RNA binding | spermatogenesis | vasculogenesis
Human Homolog	QKI[quaking homolog, KH domain RNA binding (mouse)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 153 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CACACACACA (106) 11.4 0.0114 P8 Cb GC TTGTTTGTAA (4) 11.4 0.0114 P8 Cb GC ACTTTTGGAA (10) 4.9 0.0049 P8 Cb GC AGGCCAAGAA (5) 4.9 0.0049 P8 Cb GC TAAACACTGT (4) 4.9 0.0049 P8 Cb GC TAAGTCTCGG (5) 3.3 0.0033 P8 Cb GC TAATGAAATT (3) 3.3 0.0033 P8 Cb GC CTGTGTATGT (4) 1.6 0.0016 P8 Cb GC GCTTTTACAT (3) 1.6 0.0016 P8 Cb GC GTGACCTCTC (6) 1.6 0.0016 Cb medulloblastoma CACACACACA (106) 32.4 0.0324 Cb medulloblastoma TTGTTTGTAA (4) 23.1 0.0231 Cb medulloblastoma TCAAGTGAGC (3) 16.2 0.0162 Cb medulloblastoma TAAACACTGT (4) 9.2 0.0092 Cb medulloblastoma TAAGTCTCGG (5) 4.6 0.0046 Cb medulloblastoma TAATTTTGGA (6) 4.6 0.0046 Cb medulloblastoma ACTTTTGGAA (10) 2.3 0.0023 Cb medulloblastoma AGGCCAAGAA (5) 2.3 0.0023 Cb medulloblastoma ATTTTTTTCT (11) 2.3 0.0023 Cb medulloblastoma CTTTTTTTCA (9) 2.3 0.0023 Cb medulloblastoma TAAGATAATG (9) 2.3 0.0023 P8 GC+1d culture CACACACACA (106) 6.8 0.0068 P8 GC+1d culture TAAGATAATG (9) 4.6 0.0046 P8 GC+1d culture TAAGTCTCGG (5) 3.4 0.0034 P8 GC+1d culture AGGCCAAGAA (5) 1.1 0.0011 P8 GC+1d culture CTTTTTTTCA (9) 1.1 0.0011 P8 GC+1d culture GTGACCTCTC (6) 1.1 0.0011 P8 GC+1d culture TAAACACTGT (4) 1.1 0.0011 P8 GC+1d culture TAATGAAATT (3) 1.1 0.0011 P8 GC+1d culture TTGTTTGTAA (4) 1.1 0.0011 P8 GC+SHH+1d culture CACACACACA (106) 9.4 0.0094 P8 GC+SHH+1d culture TAAGTCTCGG (5) 7 0.007 P8 GC+SHH+1d culture AGGCCAAGAA (5) 3.5 0.0035 P8 GC+SHH+1d culture GTGACCTCTC (6) 3.5 0.0035 P8 GC+SHH+1d culture TAAACACTGT (4) 3.5 0.0035 P8 GC+SHH+1d culture TTGTTTGTAA (4) 3.5 0.0035 P8 GC+SHH+1d culture CTTTTTTTCA (9) 1.2 0.0012 P8 GC+SHH+1d culture TAAGATAATG (9) 1.2 0.0012 P8 GC+SHH+1d culture TAATGAAATT (3) 1.2 0.0012 P8 GC+SHH+1d culture TAATTTTGGA (6) 1.2 0.0012 P8 GC+SHH+1d culture TCAAGTGAGC (3) 1.2 0.0012 3T3 fibroblasts CACACACACA (106) 17.5 0.0175 3T3 fibroblasts AGGCCAAGAA (5) 10.5 0.0105 3T3 fibroblasts GTCATAGCTG (590) 10.5 0.0105 E15 cortex TAATGAAATT (3) 9.9 0.0099 E15 cortex ACTTTTGGAA (10) 4.9 0.0049 E15 cortex CACACACACA (106) 4.9 0.0049 E15 cortex GTCATAGCTG (590) 4.9 0.0049 P1 cortex CACACACACA (106) 27.3 0.0273 P1 cortex TAATGAAATT (3) 18.2 0.0182 P1 cortex AGGCCAAGAA (5) 13.6 0.0136 P1 cortex CTGTGTATGT (4) 4.5 0.0045 P1 cortex TAAACACTGT (4) 4.5 0.0045 Hypothalamus CACACACACA (106) 96 0.096 Hypothalamus TTGTTTGTAA (4) 14.5 0.0145 Hypothalamus TCAAGTGAGC (3) 5.4 0.0054 Hypothalamus TAAACACTGT (4) 3.6 0.0036 Hypothalamus ACTTTTGGAA (10) 1.8 0.0018 Hypothalamus AGGCCAAGAA (5) 1.8 0.0018 Hypothalamus CCTGCCTGCT (8) 1.8 0.0018 Hypothalamus GCTTTTACAT (3) 1.8 0.0018 Hypothalamus GTGACCTCTC (6) 1.8 0.0018 Hypothalamus TAAGATAATG (9) 1.8 0.0018 Hypothalamus TAAGTCTCGG (5) 1.8 0.0018 E12.5 retina TAAACACTGT (4) 13.1 0.0131 E12.5 retina TAAGATAATG (9) 5.6 0.0056 E12.5 retina TAAGTCTCGG (5) 5.6 0.0056 E12.5 retina TTGTTTGTAA (4) 5.6 0.0056 E12.5 retina ACTTTTGGAA (10) 3.8 0.0038 E12.5 retina CACACACACA (106) 3.8 0.0038 E12.5 retina TCAAGTGAGC (3) 3.8 0.0038 E12.5 retina AGGCCAAGAA (5) 1.9 0.0019 E12.5 retina GCAGAGGATG (7) 1.9 0.0019 E14.5 retina CACACACACA (106) 18.2 0.0182 E14.5 retina TAAACACTGT (4) 7.3 0.0073 E14.5 retina AGGCCAAGAA (5) 1.8 0.0018 E14.5 retina ATTTTTTTCT (11) 1.8 0.0018 E14.5 retina CTTTTTTTCA (9) 1.8 0.0018 E14.5 retina GCAGAGGATG (7) 1.8 0.0018 E14.5 retina TAAGATAATG (9) 1.8 0.0018 E14.5 retina TAAGTCTCGG (5) 1.8 0.0018 E16.5 retina CACACACACA (106) 12.7 0.0127 E16.5 retina TAAACACTGT (4) 5.4 0.0054 E16.5 retina TAAGTCTCGG (5) 3.6 0.0036 E16.5 retina TAAGATAATG (9) 1.8 0.0018 E16.5 retina TAATGAAATT (3) 1.8 0.0018 E18.5 retina CACACACACA (106) 5.5 0.0055 E18.5 retina TTGTTTGTAA (4) 5.5 0.0055 E18.5 retina TAAGATAATG (9) 3.6 0.0036 E18.5 retina CCTGCCTGCT (8) 1.8 0.0018 E18.5 retina GCTTTTACAT (3) 1.8 0.0018 E18.5 retina TAAACACTGT (4) 1.8 0.0018 E18.5 retina TAAGTCTCGG (5) 1.8 0.0018 E18.5 retina TAATGAAATT (3) 1.8 0.0018 P0.5 retina AGGCCAAGAA (5) 15.7 0.0157 P0.5 retina CACACACACA (106) 7.9 0.0079 P0.5 retina TAAGTCTCGG (5) 5.9 0.0059 P0.5 retina GTCATAGCTG (590) 3.9 0.0039 P0.5 retina GTGACCTCTC (6) 3.9 0.0039 P0.5 retina TAAACACTGT (4) 3.9 0.0039 P0.5 retina GCTTTTACAT (3) 2 0.002 P0.5 retina TAATGAAATT (3) 2 0.002 P0.5 retina TCAAGTGAGC (3) 2 0.002 P0.5 retina TTGTTTGTAA (4) 2 0.002 P2.5 retina CACACACACA (106) 21.1 0.0211 P2.5 retina TAAACACTGT (4) 5.3 0.0053 P2.5 retina TAAGATAATG (9) 5.3 0.0053 P2.5 retina TTGTTTGTAA (4) 5.3 0.0053 P2.5 retina AGGCCAAGAA (5) 3.5 0.0035 P2.5 retina CTTTTTTTCA (9) 3.5 0.0035 P2.5 retina TAAGTCTCGG (5) 3.5 0.0035 P2.5 retina ACTTTTGGAA (10) 1.8 0.0018 P2.5 retina GCTTTTACAT (3) 1.8 0.0018 P2.5 retina GTCATAGCTG (590) 1.8 0.0018 P2.5 retina TAATGAAATT (3) 1.8 0.0018 P2.5 retina TCAAGTGAGC (3) 1.8 0.0018 P4.5 retina CACACACACA (106) 7.9 0.0079 P4.5 retina TTGTTTGTAA (4) 7.9 0.0079 P4.5 retina TAAACACTGT (4) 4 0.004 P4.5 retina ATTTTTTTCT (11) 2 0.002 P4.5 retina CCTGCCTGCT (8) 2 0.002 P4.5 retina GTCATAGCTG (590) 2 0.002 P4.5 retina TAAGTCTCGG (5) 2 0.002 P6.5 retina CACACACACA (106) 8.3 0.0083 P6.5 retina GTCATAGCTG (590) 3.3 0.0033 P6.5 retina TAAGTCTCGG (5) 3.3 0.0033 P6.5 retina TTGTTTGTAA (4) 3.3 0.0033 P6.5 retina AGGCCAAGAA (5) 1.7 0.0017 P6.5 retina TAAACACTGT (4) 1.7 0.0017 P6.5 retina TAAGATAATG (9) 1.7 0.0017 P6.5 retina TAATGAAATT (3) 1.7 0.0017 P10.5 crx- retina AGGCCAAGAA (5) 7.4 0.0074 P10.5 crx- retina CACACACACA (106) 5.6 0.0056 P10.5 crx- retina CTTTTTTTCA (9) 3.7 0.0037 P10.5 crx- retina TAAACACTGT (4) 3.7 0.0037 P10.5 crx- retina ACTTTTGGAA (10) 1.9 0.0019 P10.5 crx- retina TAAGTCTCGG (5) 1.9 0.0019 P10.5 crx+ retina CACACACACA (106) 7.7 0.0077 P10.5 crx+ retina TAAGTCTCGG (5) 5.8 0.0058 P10.5 crx+ retina TAAACACTGT (4) 3.8 0.0038 P10.5 crx+ retina AGGCCAAGAA (5) 1.9 0.0019 P10.5 crx+ retina TAATGAAATT (3) 1.9 0.0019 P10.5 crx+ retina TTGTTTGTAA (4) 1.9 0.0019 Adult retinal CACACACACA (106) 16.7 0.0167 Adult retinal AGGCCAAGAA (5) 1.9 0.0019 Adult retinal GTCATAGCTG (590) 1.9 0.0019 Adult retinal TAAACACTGT (4) 1.9 0.0019 Adult retinal TAAGTCTCGG (5) 1.9 0.0019 ONL CACACACACA (106) 21.1 0.0211 ONL GTCATAGCTG (590) 5.7 0.0057 ONL TAAACACTGT (4) 3.8 0.0038 ONL ATTTTTTTCT (11) 1.9 0.0019 ONL CTGTGTATGT (4) 1.9 0.0019