Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.26272
D1Ertd53e
DNA segment, Chr 1, ERATO Doi 53, expressed
1
1 30.1 cM
52084
Mm.26272
C130065N10Rik
RIKEN cDNA C130065N10 gene
1
319340
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 87 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
CCTTTAATCC (
355
)
52.2
0.0522
P8 Cb GC
CAGCAACCTT (
3
)
6.5
0.0065
P8 Cb GC
AATGATGCAG (
4
)
3.3
0.0033
P8 Cb GC
TTATTTGTAT (
3
)
3.3
0.0033
Cb medulloblastoma
CCTTTAATCC (
355
)
41.6
0.0416
Cb medulloblastoma
CAGCAACCTT (
3
)
6.9
0.0069
Cb medulloblastoma
AATGATGCAG (
4
)
2.3
0.0023
P8 GC+1d culture
CCTTTAATCC (
355
)
32
0.032
P8 GC+1d culture
TTATTTGTAT (
3
)
8
0.008
P8 GC+1d culture
AATGATGCAG (
4
)
6.8
0.0068
P8 GC+1d culture
CAGCAACCTT (
3
)
5.7
0.0057
P8 GC+1d culture
CAAAGGAGAT
(
3
)
2.3
0.0023
P8 GC+1d culture
TAGACATTTT
(
6
)
2.3
0.0023
P8 GC+1d culture
TGAGCCATTA
(
2
)
1.1
0.0011
P8 GC+SHH+1d culture
CCTTTAATCC (
355
)
25.8
0.0258
P8 GC+SHH+1d culture
CAGCAACCTT (
3
)
10.5
0.0105
P8 GC+SHH+1d culture
TTATTTGTAT (
3
)
7
0.007
P8 GC+SHH+1d culture
AATGATGCAG (
4
)
3.5
0.0035
P8 GC+SHH+1d culture
CAAAGGAGAT
(
3
)
2.3
0.0023
3T3 fibroblasts
CCTTTAATCC (
355
)
70.1
0.0701
E15 cortex
CCTTTAATCC (
355
)
54.4
0.0544
E15 cortex
AATGATGCAG (
4
)
4.9
0.0049
P1 cortex
CCTTTAATCC (
355
)
154.5
0.1545
P1 cortex
AATGATGCAG (
4
)
4.5
0.0045
P1 cortex
CAGCAACCTT (
3
)
4.5
0.0045
Hypothalamus
CCTTTAATCC (
355
)
19.9
0.0199
Hypothalamus
TGAGCCATTA
(
2
)
3.6
0.0036
Hypothalamus
CAGCAACCTT (
3
)
1.8
0.0018
Hypothalamus
CCAGAAATAA
(
5
)
1.8
0.0018
Hypothalamus
TAACAGACTG
(
2
)
1.8
0.0018
Hypothalamus
TTATTTGTAT (
3
)
1.8
0.0018
E12.5 retina
CCTTTAATCC (
355
)
75.1
0.0751
E12.5 retina
CAGCAACCTT (
3
)
15
0.015
E12.5 retina
TTATTTGTAT (
3
)
3.8
0.0038
E12.5 retina
AATGATGCAG (
4
)
1.9
0.0019
E14.5 retina
CCTTTAATCC (
355
)
120.3
0.1203
E14.5 retina
AATGATGCAG (
4
)
7.3
0.0073
E14.5 retina
CAGCAACCTT (
3
)
7.3
0.0073
E16.5 retina
CCTTTAATCC (
355
)
68.8
0.0688
E16.5 retina
CAGCAACCTT (
3
)
16.3
0.0163
E16.5 retina
AATGATGCAG (
4
)
9.1
0.0091
E16.5 retina
CCAGAAATAA
(
5
)
1.8
0.0018
E18.5 retina
CCTTTAATCC (
355
)
23.6
0.0236
E18.5 retina
CAGCAACCTT (
3
)
10.9
0.0109
E18.5 retina
TTATTTGTAT (
3
)
5.5
0.0055
E18.5 retina
AATGATGCAG (
4
)
1.8
0.0018
E18.5 retina
TAGACATTTT
(
6
)
1.8
0.0018
P0.5 retina
CCTTTAATCC (
355
)
72.6
0.0726
P0.5 retina
AATGATGCAG (
4
)
7.9
0.0079
P0.5 retina
CAGCAACCTT (
3
)
3.9
0.0039
P2.5 retina
CCTTTAATCC (
355
)
70.4
0.0704
P2.5 retina
CAGCAACCTT (
3
)
8.8
0.0088
P2.5 retina
TTATTTGTAT (
3
)
7
0.007
P2.5 retina
AATGATGCAG (
4
)
5.3
0.0053
P2.5 retina
TAGACATTTT
(
6
)
1.8
0.0018
P2.5 retina
TGAGCCATTA
(
2
)
1.8
0.0018
P4.5 retina
CCTTTAATCC (
355
)
43.6
0.0436
P4.5 retina
CAGCAACCTT (
3
)
25.8
0.0258
P4.5 retina
AATGATGCAG (
4
)
7.9
0.0079
P4.5 retina
TAGACATTTT
(
6
)
2
0.002
P4.5 retina
TTATTTGTAT (
3
)
2
0.002
P6.5 retina
CCTTTAATCC (
355
)
70
0.07
P6.5 retina
CAGCAACCTT (
3
)
10
0.01
P6.5 retina
AATGATGCAG (
4
)
5
0.005
P6.5 retina
TAACAGACTG
(
2
)
3.3
0.0033
P6.5 retina
TGAGCCATTA
(
2
)
1.7
0.0017
P6.5 retina
TTATTTGTAT (
3
)
1.7
0.0017
P10.5 crx- retina
CCTTTAATCC (
355
)
63.2
0.0632
P10.5 crx- retina
CAGCAACCTT (
3
)
5.6
0.0056
P10.5 crx- retina
TTATTTGTAT (
3
)
3.7
0.0037
P10.5 crx- retina
TAACAGACTG
(
2
)
1.9
0.0019
P10.5 crx- retina
TGAGCCATTA
(
2
)
1.9
0.0019
P10.5 crx+ retina
CCTTTAATCC (
355
)
38.4
0.0384
P10.5 crx+ retina
TGAGCCATTA
(
2
)
7.7
0.0077
P10.5 crx+ retina
CAGCAACCTT (
3
)
5.8
0.0058
P10.5 crx+ retina
AATGATGCAG (
4
)
3.8
0.0038
P10.5 crx+ retina
TTATTTGTAT (
3
)
3.8
0.0038
Adult retinal
CCTTTAATCC (
355
)
129.6
0.1296
Adult retinal
CAGCAACCTT (
3
)
7.4
0.0074
Adult retinal
CAAAGGAGAT
(
3
)
5.6
0.0056
Adult retinal
TGAGCCATTA
(
2
)
3.7
0.0037
ONL
CCTTTAATCC (
355
)
84.3
0.0843
ONL
CAGCAACCTT (
3
)
19.2
0.0192
ONL
AATGATGCAG (
4
)
1.9
0.0019
ONL
CAAAGGAGAT
(
3
)
1.9
0.0019
ONL
CCAGAAATAA
(
5
)
1.9
0.0019
ONL
TGAGCCATTA
(
2
)
1.9
0.0019
