Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.26381	Spg3a	spastic paraplegia 3A homolog (human)	12		73991
Gene Ontology	DNA binding | GTP binding | GTPase activity | immune response | integral to membrane | nucleus
Human Homolog	SPG3A[spastic paraplegia 3A (autosomal dominant)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 102 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TTAGAAGTGA (3) 9.8 0.0098 P8 Cb GC GGAAAAAAAA (69) 8.2 0.0082 P8 Cb GC GAGTGCTTAT (4) 1.6 0.0016 P8 Cb GC GCAAGACGTT (4) 1.6 0.0016 P8 Cb GC GGGAAAAAAA (36) 1.6 0.0016 Cb medulloblastoma GGGAAAAAAA (36) 92.5 0.0925 Cb medulloblastoma GGAAAAAAAA (69) 41.6 0.0416 Cb medulloblastoma TTAGAAGTGA (3) 6.9 0.0069 Cb medulloblastoma TACAAAACAA (4) 2.3 0.0023 Cb medulloblastoma TGTTTGAGTT (3) 2.3 0.0023 P8 GC+1d culture TGTTTGAGTT (3) 6.8 0.0068 P8 GC+1d culture TTAGAAGTGA (3) 6.8 0.0068 P8 GC+1d culture GGAAAAAAAA (69) 5.7 0.0057 P8 GC+1d culture TACAAAACAA (4) 3.4 0.0034 P8 GC+1d culture CTGACTGGGT (4) 1.1 0.0011 P8 GC+1d culture GGGAAAAAAA (36) 1.1 0.0011 P8 GC+SHH+1d culture TTAGAAGTGA (3) 9.4 0.0094 P8 GC+SHH+1d culture GGAAAAAAAA (69) 7 0.007 P8 GC+SHH+1d culture TGTTTGAGTT (3) 3.5 0.0035 P8 GC+SHH+1d culture CTGACTGGGT (4) 1.2 0.0012 P8 GC+SHH+1d culture GAGTGCTTAT (4) 1.2 0.0012 P8 GC+SHH+1d culture GGGAAAAAAA (36) 1.2 0.0012 P8 GC+SHH+1d culture TATTTATTAT (8) 1.2 0.0012 P8 GC+SHH+1d culture TGGGAGAGGG (3) 1.2 0.0012 3T3 fibroblasts TTAGAAGTGA (3) 3.5 0.0035 E15 cortex GGAAAAAAAA (69) 9.9 0.0099 E15 cortex TTAGAAGTGA (3) 4.9 0.0049 P1 cortex GGAAAAAAAA (69) 4.5 0.0045 P1 cortex GGGAAAAAAA (36) 4.5 0.0045 P1 cortex GTTATTTGTC 4.5 0.0045 P1 cortex TATTTATTAT (8) 4.5 0.0045 P1 cortex TTAGAAGTGA (3) 4.5 0.0045 Hypothalamus GGGAAAAAAA (36) 41.7 0.0417 Hypothalamus GGAAAAAAAA (69) 14.5 0.0145 Hypothalamus TGTTTGAGTT (3) 3.6 0.0036 Hypothalamus TTAGAAGTGA (3) 3.6 0.0036 Hypothalamus GCAAGACGTT (4) 1.8 0.0018 Hypothalamus TACAAAACAA (4) 1.8 0.0018 Hypothalamus TATTTATTAT (8) 1.8 0.0018 E12.5 retina TTAGAAGTGA (3) 7.5 0.0075 E12.5 retina GCAAGACGTT (4) 1.9 0.0019 E12.5 retina GGAAAAAAAA (69) 1.9 0.0019 E12.5 retina TACAAAACAA (4) 1.9 0.0019 E14.5 retina GGAAAAAAAA (69) 10.9 0.0109 E14.5 retina TTAGAAGTGA (3) 7.3 0.0073 E14.5 retina TGTTTGAGTT (3) 3.6 0.0036 E14.5 retina CTGACTGGGT (4) 1.8 0.0018 E14.5 retina GGGAAAAAAA (36) 1.8 0.0018 E16.5 retina TTAGAAGTGA (3) 9.1 0.0091 E16.5 retina GGGAAAAAAA (36) 3.6 0.0036 E16.5 retina TGTTTGAGTT (3) 3.6 0.0036 E16.5 retina GAGTGCTTAT (4) 1.8 0.0018 E16.5 retina GGAAAAAAAA (69) 1.8 0.0018 E16.5 retina TACAAAACAA (4) 1.8 0.0018 E18.5 retina GGAAAAAAAA (69) 16.4 0.0164 E18.5 retina TTAGAAGTGA (3) 14.6 0.0146 E18.5 retina TGTTTGAGTT (3) 7.3 0.0073 E18.5 retina GTTATTTGTC 3.6 0.0036 E18.5 retina TACAAAACAA (4) 3.6 0.0036 E18.5 retina GGGAAAAAAA (36) 1.8 0.0018 P0.5 retina GGAAAAAAAA (69) 13.7 0.0137 P0.5 retina TTAGAAGTGA (3) 9.8 0.0098 P0.5 retina GGGAAAAAAA (36) 3.9 0.0039 P0.5 retina TGGGAGAGGG (3) 2 0.002 P0.5 retina TGTTTGAGTT (3) 2 0.002 P2.5 retina TTAGAAGTGA (3) 10.6 0.0106 P2.5 retina GGAAAAAAAA (69) 7 0.007 P2.5 retina GGGAAAAAAA (36) 7 0.007 P2.5 retina TACAAAACAA (4) 5.3 0.0053 P2.5 retina TATTTATTAT (8) 1.8 0.0018 P4.5 retina GGAAAAAAAA (69) 13.9 0.0139 P4.5 retina GGGAAAAAAA (36) 9.9 0.0099 P4.5 retina TTAGAAGTGA (3) 5.9 0.0059 P4.5 retina GCAAGACGTT (4) 4 0.004 P4.5 retina TGGGAGAGGG (3) 2 0.002 P6.5 retina GGGAAAAAAA (36) 20 0.02 P6.5 retina GGAAAAAAAA (69) 13.3 0.0133 P6.5 retina TATTTATTAT (8) 3.3 0.0033 P6.5 retina GAGTGCTTAT (4) 1.7 0.0017 P6.5 retina TGGGAGAGGG (3) 1.7 0.0017 P6.5 retina TGTTTGAGTT (3) 1.7 0.0017 P6.5 retina TTAGAAGTGA (3) 1.7 0.0017 P10.5 crx- retina GGGAAAAAAA (36) 11.1 0.0111 P10.5 crx- retina GGAAAAAAAA (69) 3.7 0.0037 P10.5 crx- retina TACAAAACAA (4) 3.7 0.0037 P10.5 crx- retina TGTTTGAGTT (3) 3.7 0.0037 P10.5 crx- retina TTAGAAGTGA (3) 3.7 0.0037 P10.5 crx+ retina GGGAAAAAAA (36) 23.1 0.0231 P10.5 crx+ retina GGAAAAAAAA (69) 15.4 0.0154 P10.5 crx+ retina TTAGAAGTGA (3) 7.7 0.0077 P10.5 crx+ retina GCAAGACGTT (4) 1.9 0.0019 P10.5 crx+ retina TACAAAACAA (4) 1.9 0.0019 P10.5 crx+ retina TGTTTGAGTT (3) 1.9 0.0019 Adult retinal GGGAAAAAAA (36) 35.2 0.0352 Adult retinal GGAAAAAAAA (69) 5.6 0.0056 Adult retinal TGTTTGAGTT (3) 3.7 0.0037 Adult retinal TTAGAAGTGA (3) 3.7 0.0037 Adult retinal CTGACTGGGT (4) 1.9 0.0019 Adult retinal TACAAAACAA (4) 1.9 0.0019 ONL GGGAAAAAAA (36) 30.6 0.0306 ONL GGAAAAAAAA (69) 17.2 0.0172 ONL TACAAAACAA (4) 1.9 0.0019