Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.2654	Wdr1	WD repeat domain 1	5	5 24.0 cM	22388
Gene Ontology	actin binding | actin cytoskeleton | cytoskeleton | hearing
Human Homolog	WDR1[WD repeat domain 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 148 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CAAAAAAAAA (157) 47.3 0.0473 P8 Cb GC TTTTAACCTT (5) 14.7 0.0147 P8 Cb GC TTAAAAAAAA (80) 13.1 0.0131 P8 Cb GC AGGAATTAGA (3) 4.9 0.0049 P8 Cb GC GGGGCTGTGG (4) 3.3 0.0033 P8 Cb GC AGAAATAAAG (4) 1.6 0.0016 P8 Cb GC GATATGAATG (4) 1.6 0.0016 P8 Cb GC GCTGCCTCCC (7) 1.6 0.0016 P8 Cb GC GCTTCTGGAG (4) 1.6 0.0016 P8 Cb GC GTAATCACGT 1.6 0.0016 P8 Cb GC TTTTTACCTT (5) 1.6 0.0016 Cb medulloblastoma CAAAAAAAAA (157) 92.5 0.0925 Cb medulloblastoma TTAAAAAAAA (80) 53.2 0.0532 Cb medulloblastoma ATGGTGCCTT (2) 2.3 0.0023 Cb medulloblastoma GCTTCTGGAG (4) 2.3 0.0023 Cb medulloblastoma TGAACCTTGA (4) 2.3 0.0023 P8 GC+1d culture CAAAAAAAAA (157) 37.7 0.0377 P8 GC+1d culture TTAAAAAAAA (80) 28.5 0.0285 P8 GC+1d culture TTTTTACCTT (5) 6.8 0.0068 P8 GC+1d culture AGGAATTAGA (3) 4.6 0.0046 P8 GC+1d culture TTTTAACCTT (5) 4.6 0.0046 P8 GC+1d culture AGAAATAAAG (4) 1.1 0.0011 P8 GC+1d culture GATATGAATG (4) 1.1 0.0011 P8 GC+1d culture GGAATTTTTT (7) 1.1 0.0011 P8 GC+1d culture GTAATCACGT 1.1 0.0011 P8 GC+SHH+1d culture CAAAAAAAAA (157) 58.5 0.0585 P8 GC+SHH+1d culture TTAAAAAAAA (80) 34 0.034 P8 GC+SHH+1d culture TTTTAACCTT (5) 10.5 0.0105 P8 GC+SHH+1d culture AGGAATTAGA (3) 8.2 0.0082 P8 GC+SHH+1d culture TTTTTACCTT (5) 5.9 0.0059 P8 GC+SHH+1d culture GATATGAATG (4) 3.5 0.0035 P8 GC+SHH+1d culture ATGGTGCCTT (2) 2.3 0.0023 P8 GC+SHH+1d culture GGAATTTTTT (7) 2.3 0.0023 P8 GC+SHH+1d culture GTAATCACGT 2.3 0.0023 P8 GC+SHH+1d culture ACAAATTAAA (2) 1.2 0.0012 P8 GC+SHH+1d culture ACTGGAGGAA 1.2 0.0012 P8 GC+SHH+1d culture CACACAGAGA (7) 1.2 0.0012 P8 GC+SHH+1d culture CTTCAGTGTT (4) 1.2 0.0012 P8 GC+SHH+1d culture TGAACCTTGA (4) 1.2 0.0012 3T3 fibroblasts ATGGTGCCTT (2) 3.5 0.0035 3T3 fibroblasts GTAATCACGT 3.5 0.0035 3T3 fibroblasts TTTTAACCTT (5) 3.5 0.0035 E15 cortex CAAAAAAAAA (157) 34.6 0.0346 E15 cortex ACAAATTAAA (2) 4.9 0.0049 E15 cortex ATGGTGCCTT (2) 4.9 0.0049 E15 cortex TTAAAAAAAA (80) 4.9 0.0049 P1 cortex CAAAAAAAAA (157) 22.7 0.0227 P1 cortex TTAAAAAAAA (80) 13.6 0.0136 P1 cortex TTTTTACCTT (5) 4.5 0.0045 Hypothalamus CAAAAAAAAA (157) 39.8 0.0398 Hypothalamus TTAAAAAAAA (80) 19.9 0.0199 Hypothalamus GGATTGGGGA 5.4 0.0054 Hypothalamus TTTTTACCTT (5) 3.6 0.0036 Hypothalamus AGAAATAAAG (4) 1.8 0.0018 Hypothalamus CTTCAGTGTT (4) 1.8 0.0018 Hypothalamus GTAATCACGT 1.8 0.0018 Hypothalamus TTTTAACCTT (5) 1.8 0.0018 E12.5 retina CAAAAAAAAA (157) 22.5 0.0225 E12.5 retina TTAAAAAAAA (80) 11.3 0.0113 E12.5 retina TTTTAACCTT (5) 11.3 0.0113 E12.5 retina GATATGAATG (4) 3.8 0.0038 E12.5 retina AGAAATAAAG (4) 1.9 0.0019 E12.5 retina AGGAATTAGA (3) 1.9 0.0019 E12.5 retina CACACAGAGA (7) 1.9 0.0019 E12.5 retina GGAAGCATAA 1.9 0.0019 E12.5 retina GGGAAGGGGA (5) 1.9 0.0019 E12.5 retina GTAATCACGT 1.9 0.0019 E14.5 retina TTAAAAAAAA (80) 16.4 0.0164 E14.5 retina TTTTAACCTT (5) 14.6 0.0146 E14.5 retina CAAAAAAAAA (157) 9.1 0.0091 E14.5 retina GATATGAATG (4) 5.5 0.0055 E14.5 retina AGGAATTAGA (3) 3.6 0.0036 E14.5 retina ATGGTGCCTT (2) 3.6 0.0036 E14.5 retina CTTCAGTGTT (4) 1.8 0.0018 E16.5 retina TTAAAAAAAA (80) 16.3 0.0163 E16.5 retina TTTTAACCTT (5) 10.9 0.0109 E16.5 retina CAAAAAAAAA (157) 9.1 0.0091 E16.5 retina TTTTTACCTT (5) 7.2 0.0072 E16.5 retina GATATGAATG (4) 3.6 0.0036 E16.5 retina GTAATCACGT 3.6 0.0036 E16.5 retina CTTCAGTGTT (4) 1.8 0.0018 E18.5 retina TTAAAAAAAA (80) 50.9 0.0509 E18.5 retina CAAAAAAAAA (157) 41.8 0.0418 E18.5 retina TTTTAACCTT (5) 16.4 0.0164 E18.5 retina AGGAATTAGA (3) 3.6 0.0036 E18.5 retina GGAAGCATAA 3.6 0.0036 E18.5 retina GTAATCACGT 3.6 0.0036 E18.5 retina AGAAATAAAG (4) 1.8 0.0018 P0.5 retina CAAAAAAAAA (157) 137.4 0.1374 P0.5 retina TTAAAAAAAA (80) 17.7 0.0177 P0.5 retina TTTTAACCTT (5) 7.9 0.0079 P0.5 retina GCTGCCTCCC (7) 3.9 0.0039 P0.5 retina CTTCTGGAGA (6) 2 0.002 P0.5 retina TTTTTACCTT (5) 2 0.002 P2.5 retina CAAAAAAAAA (157) 52.8 0.0528 P2.5 retina TTAAAAAAAA (80) 40.5 0.0405 P2.5 retina TTTTTACCTT (5) 8.8 0.0088 P2.5 retina GGAAGCATAA 5.3 0.0053 P2.5 retina TTTTAACCTT (5) 5.3 0.0053 P2.5 retina GATATGAATG (4) 3.5 0.0035 P2.5 retina GGGAAGGGGA (5) 3.5 0.0035 P2.5 retina GTAATCACGT 3.5 0.0035 P2.5 retina ACTGGAGGAA 1.8 0.0018 P2.5 retina AGAAATAAAG (4) 1.8 0.0018 P2.5 retina CACACAGAGA (7) 1.8 0.0018 P2.5 retina GGATTGGGGA 1.8 0.0018 P2.5 retina TGAACCTTGA (4) 1.8 0.0018 P4.5 retina TTAAAAAAAA (80) 47.6 0.0476 P4.5 retina CAAAAAAAAA (157) 41.6 0.0416 P4.5 retina GATATGAATG (4) 4 0.004 P4.5 retina ATGGTGCCTT (2) 2 0.002 P4.5 retina GCTGCCTCCC (7) 2 0.002 P4.5 retina GGGAAGGGGA (5) 2 0.002 P4.5 retina TTTTAACCTT (5) 2 0.002 P4.5 retina TTTTTACCTT (5) 2 0.002 P6.5 retina CAAAAAAAAA (157) 31.7 0.0317 P6.5 retina TTAAAAAAAA (80) 16.7 0.0167 P6.5 retina TTTTAACCTT (5) 6.7 0.0067 P6.5 retina GATATGAATG (4) 5 0.005 P6.5 retina TTTTTACCTT (5) 5 0.005 P6.5 retina GGAAGCATAA 1.7 0.0017 P6.5 retina GTAATCACGT 1.7 0.0017 P10.5 crx- retina TTTTTACCTT (5) 18.6 0.0186 P10.5 crx- retina CAAAAAAAAA (157) 13 0.013 P10.5 crx- retina TTAAAAAAAA (80) 13 0.013 P10.5 crx- retina CTTCTGGAGA (6) 5.6 0.0056 P10.5 crx- retina ACTGGAGGAA 1.9 0.0019 P10.5 crx- retina TGAACCTTGA (4) 1.9 0.0019 P10.5 crx- retina TTTTAACCTT (5) 1.9 0.0019 P10.5 crx+ retina CAAAAAAAAA (157) 32.7 0.0327 P10.5 crx+ retina GTAATCACGT 7.7 0.0077 P10.5 crx+ retina TTAAAAAAAA (80) 5.8 0.0058 P10.5 crx+ retina TTTTAACCTT (5) 1.9 0.0019 P10.5 crx+ retina TTTTTACCTT (5) 1.9 0.0019 Adult retinal CAAAAAAAAA (157) 20.4 0.0204 Adult retinal TTAAAAAAAA (80) 7.4 0.0074 Adult retinal GTAATCACGT 5.6 0.0056 Adult retinal CTTCAGTGTT (4) 1.9 0.0019 Adult retinal GCTGCCTCCC (7) 1.9 0.0019 Adult retinal TGAACCTTGA (4) 1.9 0.0019 Adult retinal TTTTTACCTT (5) 1.9 0.0019 ONL CAAAAAAAAA (157) 17.2 0.0172 ONL TTAAAAAAAA (80) 7.7 0.0077 ONL AGAAATAAAG (4) 3.8 0.0038 ONL ACTGGAGGAA 1.9 0.0019 ONL GATATGAATG (4) 1.9 0.0019 ONL GGATTGGGGA 1.9 0.0019 ONL GTAATCACGT 1.9 0.0019