Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.26743	Apoa1	apolipoprotein A-I	9	9 27.0 cM	11806
Gene Ontology	extracellular space | extracellular space | lipid transporter activity | protein binding | regulation of cholesterol absorption
Human Homolog	APOA1[apolipoprotein A-I]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 102 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAAAAAAAAA (658) 203.9 0.2039 P8 Cb GC GAAAAAAAAA (204) 45.7 0.0457 P8 Cb GC GCCTGGACTT (5) 6.5 0.0065 P8 Cb GC TGGGTTGTCA (3) 3.3 0.0033 P8 Cb GC TGGTGGACCT (2) 1.6 0.0016 Cb medulloblastoma AAAAAAAAAA (658) 797.8 0.7978 Cb medulloblastoma GAAAAAAAAA (204) 173.4 0.1734 Cb medulloblastoma GCTTTCTTAC (3) 71.7 0.0717 Cb medulloblastoma GCCTGGACTT (5) 13.9 0.0139 Cb medulloblastoma GGAAACAGCT (7) 2.3 0.0023 P8 GC+1d culture AAAAAAAAAA (658) 204.3 0.2043 P8 GC+1d culture GAAAAAAAAA (204) 41.1 0.0411 P8 GC+1d culture TGGTGGACCT (2) 3.4 0.0034 P8 GC+1d culture GCCTGGACTT (5) 2.3 0.0023 P8 GC+1d culture GCTTTCTTAC (3) 2.3 0.0023 P8 GC+1d culture GGAAACAGCT (7) 2.3 0.0023 P8 GC+1d culture CCTACCTGGA (4) 1.1 0.0011 P8 GC+1d culture CGCACACATT (3) 1.1 0.0011 P8 GC+1d culture TGGGTTGTCA (3) 1.1 0.0011 P8 GC+SHH+1d culture AAAAAAAAAA (658) 278.7 0.2787 P8 GC+SHH+1d culture GAAAAAAAAA (204) 77.3 0.0773 P8 GC+SHH+1d culture TGGTGGACCT (2) 9.4 0.0094 P8 GC+SHH+1d culture GCCTGGACTT (5) 7 0.007 P8 GC+SHH+1d culture CGCACACATT (3) 1.2 0.0012 P8 GC+SHH+1d culture CTGGAGACCT (6) 1.2 0.0012 P8 GC+SHH+1d culture GCTTTCTTAC (3) 1.2 0.0012 3T3 fibroblasts AAAAAAAAAA (658) 28 0.028 3T3 fibroblasts TGGTGGACCT (2) 10.5 0.0105 3T3 fibroblasts CCTACCTGGA (4) 7 0.007 E15 cortex AAAAAAAAAA (658) 212.8 0.2128 E15 cortex GAAAAAAAAA (204) 54.4 0.0544 E15 cortex GCTTTCTTAC (3) 4.9 0.0049 P1 cortex AAAAAAAAAA (658) 245.4 0.2454 P1 cortex GAAAAAAAAA (204) 45.5 0.0455 P1 cortex GCCTGGACTT (5) 4.5 0.0045 P1 cortex GGAAACAGCT (7) 4.5 0.0045 P1 cortex TGGGTTGTCA (3) 4.5 0.0045 Hypothalamus GCTTTCTTAC (3) 230 0.23 Hypothalamus AAAAAAAAAA (658) 123.2 0.1232 Hypothalamus GAAAAAAAAA (204) 67 0.067 Hypothalamus TGGAAAGCTT (4) 9.1 0.0091 Hypothalamus GCCTGGACTT (5) 5.4 0.0054 Hypothalamus TGGTGGACCT (2) 1.8 0.0018 E12.5 retina AAAAAAAAAA (658) 138.9 0.1389 E12.5 retina GAAAAAAAAA (204) 46.9 0.0469 E12.5 retina GCTTTCTTAC (3) 3.8 0.0038 E12.5 retina CGCACACATT (3) 1.9 0.0019 E12.5 retina CTGGAGACCT (6) 1.9 0.0019 E14.5 retina AAAAAAAAAA (658) 94.7 0.0947 E14.5 retina GAAAAAAAAA (204) 34.6 0.0346 E14.5 retina GGAAACAGCT (7) 1.8 0.0018 E14.5 retina TGGGTTGTCA (3) 1.8 0.0018 E14.5 retina TGGTGGACCT (2) 1.8 0.0018 E16.5 retina AAAAAAAAAA (658) 43.5 0.0435 E16.5 retina GAAAAAAAAA (204) 23.5 0.0235 E16.5 retina GCCTGGACTT (5) 5.4 0.0054 E16.5 retina CCTACCTGGA (4) 1.8 0.0018 E16.5 retina CGCACACATT (3) 1.8 0.0018 E16.5 retina CTGGAGACCT (6) 1.8 0.0018 E16.5 retina GCTTTCTTAC (3) 1.8 0.0018 E16.5 retina TGGGTTGTCA (3) 1.8 0.0018 E18.5 retina AAAAAAAAAA (658) 374.7 0.3747 E18.5 retina GAAAAAAAAA (204) 65.5 0.0655 E18.5 retina GCCTGGACTT (5) 1.8 0.0018 E18.5 retina GCTTTCTTAC (3) 1.8 0.0018 P0.5 retina AAAAAAAAAA (658) 117.8 0.1178 P0.5 retina GAAAAAAAAA (204) 35.3 0.0353 P0.5 retina TGGGTTGTCA (3) 5.9 0.0059 P0.5 retina CGCACACATT (3) 3.9 0.0039 P0.5 retina GCTTTCTTAC (3) 3.9 0.0039 P0.5 retina GGAAACAGCT (7) 2 0.002 P0.5 retina TGGCTGAGGA 2 0.002 P0.5 retina TGGTGGACCT (2) 2 0.002 P2.5 retina AAAAAAAAAA (658) 329.1 0.3291 P2.5 retina GAAAAAAAAA (204) 86.2 0.0862 P2.5 retina GCTTTCTTAC (3) 3.5 0.0035 P2.5 retina TGGGTTGTCA (3) 1.8 0.0018 P4.5 retina AAAAAAAAAA (658) 283.3 0.2833 P4.5 retina GAAAAAAAAA (204) 51.5 0.0515 P4.5 retina TGGCTGAGGA 2 0.002 P6.5 retina AAAAAAAAAA (658) 266.8 0.2668 P6.5 retina GAAAAAAAAA (204) 40 0.04 P6.5 retina GCTTTCTTAC (3) 10 0.01 P6.5 retina CCTACCTGGA (4) 1.7 0.0017 P10.5 crx- retina AAAAAAAAAA (658) 44.6 0.0446 P10.5 crx- retina GAAAAAAAAA (204) 16.7 0.0167 P10.5 crx- retina GCCTGGACTT (5) 11.1 0.0111 P10.5 crx- retina TGGTGGACCT (2) 1.9 0.0019 P10.5 crx+ retina AAAAAAAAAA (658) 96.1 0.0961 P10.5 crx+ retina GAAAAAAAAA (204) 42.3 0.0423 P10.5 crx+ retina GCTTTCTTAC (3) 7.7 0.0077 P10.5 crx+ retina GCCTGGACTT (5) 3.8 0.0038 Adult retinal AAAAAAAAAA (658) 57.4 0.0574 Adult retinal GCTTTCTTAC (3) 27.8 0.0278 Adult retinal GAAAAAAAAA (204) 16.7 0.0167 Adult retinal GCCTGGACTT (5) 3.7 0.0037 Adult retinal TGGAAAGCTT (4) 1.9 0.0019 Adult retinal TGGCTGAGGA 1.9 0.0019 ONL AAAAAAAAAA (658) 103.4 0.1034 ONL GAAAAAAAAA (204) 24.9 0.0249 ONL AAATGGAAAG (4) 5.7 0.0057 ONL GCTTTCTTAC (3) 3.8 0.0038