Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.268018
Lix1
limb expression 1 homolog (chicken)
17
66643
Gene Ontology
biological_process unknown
|
cellular_component unknown
|
molecular_function unknown
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 92 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
CCTTTAATCC (
355
)
52.2
0.0522
P8 Cb GC
TTTACTGTGT (
3
)
26.1
0.0261
P8 Cb GC
GAAGCAGTTC (
4
)
3.3
0.0033
P8 Cb GC
GGAACCAGCC (
4
)
3.3
0.0033
P8 Cb GC
GTCTAAAGAG (
3
)
3.3
0.0033
Cb medulloblastoma
CCTTTAATCC (
355
)
41.6
0.0416
Cb medulloblastoma
ATGGTTTAAT
(
2
)
4.6
0.0046
Cb medulloblastoma
GGAACCAGCC (
4
)
4.6
0.0046
Cb medulloblastoma
TTTACTGTGT (
3
)
2.3
0.0023
P8 GC+1d culture
CCTTTAATCC (
355
)
32
0.032
P8 GC+1d culture
GTCTAAAGAG (
3
)
6.8
0.0068
P8 GC+1d culture
GGAACCAGCC (
4
)
3.4
0.0034
P8 GC+1d culture
TTTACTGTGT (
3
)
3.4
0.0034
P8 GC+SHH+1d culture
CCTTTAATCC (
355
)
25.8
0.0258
P8 GC+SHH+1d culture
TTTACTGTGT (
3
)
10.5
0.0105
P8 GC+SHH+1d culture
GGAACCAGCC (
4
)
7
0.007
P8 GC+SHH+1d culture
GTCTAAAGAG (
3
)
2.3
0.0023
P8 GC+SHH+1d culture
GAAGCAGTTC (
4
)
1.2
0.0012
3T3 fibroblasts
CCTTTAATCC (
355
)
70.1
0.0701
3T3 fibroblasts
GGAACCAGCC (
4
)
14
0.014
3T3 fibroblasts
GTCTAAAGAG (
3
)
3.5
0.0035
3T3 fibroblasts
TTTACTGTGT (
3
)
3.5
0.0035
E15 cortex
CCTTTAATCC (
355
)
54.4
0.0544
E15 cortex
GGAACCAGCC (
4
)
9.9
0.0099
E15 cortex
TTTACTGTGT (
3
)
4.9
0.0049
P1 cortex
CCTTTAATCC (
355
)
154.5
0.1545
P1 cortex
GGAACCAGCC (
4
)
18.2
0.0182
P1 cortex
TTTACTGTGT (
3
)
13.6
0.0136
P1 cortex
GTCTAAAGAG (
3
)
4.5
0.0045
Hypothalamus
TTTACTGTGT (
3
)
21.7
0.0217
Hypothalamus
CCTTTAATCC (
355
)
19.9
0.0199
Hypothalamus
GTCTAAAGAG (
3
)
5.4
0.0054
Hypothalamus
GGAACCAGCC (
4
)
3.6
0.0036
Hypothalamus
ATGGTTTAAT
(
2
)
1.8
0.0018
Hypothalamus
GAAGCAGTTC (
4
)
1.8
0.0018
E12.5 retina
CCTTTAATCC (
355
)
75.1
0.0751
E12.5 retina
TTTACTGTGT (
3
)
22.5
0.0225
E12.5 retina
GTCTAAAGAG (
3
)
3.8
0.0038
E12.5 retina
GAAGCAGTTC (
4
)
1.9
0.0019
E12.5 retina
GGAACCAGCC (
4
)
1.9
0.0019
E14.5 retina
CCTTTAATCC (
355
)
120.3
0.1203
E14.5 retina
TTTACTGTGT (
3
)
16.4
0.0164
E14.5 retina
GAAGCAGTTC (
4
)
7.3
0.0073
E14.5 retina
GGAACCAGCC (
4
)
5.5
0.0055
E16.5 retina
CCTTTAATCC (
355
)
68.8
0.0688
E16.5 retina
TTTACTGTGT (
3
)
10.9
0.0109
E16.5 retina
GGAACCAGCC (
4
)
7.2
0.0072
E16.5 retina
GAAGCAGTTC (
4
)
3.6
0.0036
E16.5 retina
GTCTAAAGAG (
3
)
1.8
0.0018
E18.5 retina
CCTTTAATCC (
355
)
23.6
0.0236
E18.5 retina
TTTACTGTGT (
3
)
16.4
0.0164
E18.5 retina
GAAGCAGTTC (
4
)
5.5
0.0055
E18.5 retina
GGAACCAGCC (
4
)
1.8
0.0018
E18.5 retina
GTCTAAAGAG (
3
)
1.8
0.0018
P0.5 retina
CCTTTAATCC (
355
)
72.6
0.0726
P0.5 retina
GGAACCAGCC (
4
)
7.9
0.0079
P0.5 retina
GAAGCAGTTC (
4
)
5.9
0.0059
P2.5 retina
CCTTTAATCC (
355
)
70.4
0.0704
P2.5 retina
TTTACTGTGT (
3
)
8.8
0.0088
P2.5 retina
GAAGCAGTTC (
4
)
3.5
0.0035
P2.5 retina
GTCTAAAGAG (
3
)
3.5
0.0035
P2.5 retina
GGAACCAGCC (
4
)
1.8
0.0018
P4.5 retina
CCTTTAATCC (
355
)
43.6
0.0436
P4.5 retina
TTTACTGTGT (
3
)
7.9
0.0079
P4.5 retina
GTCTAAAGAG (
3
)
5.9
0.0059
P4.5 retina
GAAGCAGTTC (
4
)
2
0.002
P4.5 retina
GGAACCAGCC (
4
)
2
0.002
P6.5 retina
CCTTTAATCC (
355
)
70
0.07
P6.5 retina
TTTACTGTGT (
3
)
5
0.005
P6.5 retina
GTCTAAAGAG (
3
)
3.3
0.0033
P6.5 retina
GAAGCAGTTC (
4
)
1.7
0.0017
P6.5 retina
GGAACCAGCC (
4
)
1.7
0.0017
P6.5 retina
TATGTTTTCA
(
5
)
1.7
0.0017
P10.5 crx- retina
CCTTTAATCC (
355
)
63.2
0.0632
P10.5 crx- retina
GTCTAAAGAG (
3
)
7.4
0.0074
P10.5 crx- retina
GAAGCAGTTC (
4
)
3.7
0.0037
P10.5 crx+ retina
CCTTTAATCC (
355
)
38.4
0.0384
P10.5 crx+ retina
TTTACTGTGT (
3
)
9.6
0.0096
P10.5 crx+ retina
GTCTAAAGAG (
3
)
7.7
0.0077
P10.5 crx+ retina
GAAGCAGTTC (
4
)
3.8
0.0038
P10.5 crx+ retina
GGAACCAGCC (
4
)
3.8
0.0038
P10.5 crx+ retina
TATGTTTTCA
(
5
)
1.9
0.0019
Adult retinal
CCTTTAATCC (
355
)
129.6
0.1296
Adult retinal
TTTACTGTGT (
3
)
9.3
0.0093
Adult retinal
GAAGCAGTTC (
4
)
5.6
0.0056
Adult retinal
GTCTAAAGAG (
3
)
5.6
0.0056
Adult retinal
GGAACCAGCC (
4
)
1.9
0.0019
Adult retinal
TATGTTTTCA
(
5
)
1.9
0.0019
ONL
CCTTTAATCC (
355
)
84.3
0.0843
ONL
TTTACTGTGT (
3
)
11.5
0.0115
ONL
GTCTAAAGAG (
3
)
3.8
0.0038
ONL
GGAACCAGCC (
4
)
1.9
0.0019
