Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.269474	Ctcf	CCCTC-binding factor	8		13018
Gene Ontology	DNA binding | DNA methylation | dosage compensation, by inactivation of X chromosome | imprinting | negative regulation of cell cycle | nucleic acid binding | nucleus | regulation of transcription, DNA-dependent | regulation of transcription, DNA-dependent | zinc ion binding
Human Homolog	CTCF[CCCTC-binding factor (zinc finger protein)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 46 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAGATGCACA (2) AGACCTGTAA CAGATAACTG CTACGATCAG GAGCCAGCGT 24.6 0.0246 Cb medulloblastoma AAGATGCACA (2) AGACCTGTAA GAGCCAGCGT 11.5 0.0115 P8 GC+1d culture AAGATGCACA (2) AGACCTGTAA 9.1 0.0091 P8 GC+SHH+1d culture AAGATGCACA (2) AGACCTGTAA ATGGACCGGT GAGCCAGCGT TTCCCAGGGC 14.2 0.0142 E15 cortex ATGGACCGGT CAGATAACTG GAGGGTACAG 19.7 0.0197 P1 cortex GAGGGTACAG 4.5 0.0045 E12.5 retina AGACCTGTAA 7.5 0.0075 E14.5 retina AGACCTGTAA GAGCCAGCGT TTCCCAGGGC 5.4 0.0054 E16.5 retina AGACCTGTAA GAGCCAGCGT TTCCCAGGGC 19.9 0.0199 E18.5 retina AGACCTGTAA GAGCCAGCGT 14.5 0.0145 P0.5 retina AGACCTGTAA 7.9 0.0079 P2.5 retina AGACCTGTAA GAGCCAGCGT 14.1 0.0141 P4.5 retina AGACCTGTAA 9.9 0.0099 P6.5 retina AGACCTGTAA CTACGATCAG GAGCCAGCGT 6.7 0.0067 P10.5 crx- retina AGACCTGTAA 3.7 0.0037 P10.5 crx+ retina AGACCTGTAA ATGGACCGGT CAGATAACTG GAGCCAGCGT 9.5 0.0095 Adult retinal AAGATGCACA (2) AGACCTGTAA CTACGATCAG GAGCCAGCGT 11.3 0.0113 ONL AGACCTGTAA ATGGACCGGT 3.8 0.0038