Mouse Retina SAGE Library

[Home]    [Libraries]    [Images]

---

Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

---

UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.270278	Tef	thyrotroph embryonic factor	15	15 46.7 cM	21685
Gene Ontology	DNA binding | double-stranded DNA binding | nucleus | positive regulation of transcription from Pol II promoter | protein binding | regulation of transcription, DNA-dependent | rhythmic behavior | transcriptional activator activity
Human Homolog	TEF[thyrotrophic embryonic factor]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 104 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TGTGTGTGTG (115) 27.7 0.0277 P8 Cb GC TGAGCCAACT (2) 6.5 0.0065 P8 Cb GC CACTTAGAAC (2) 3.3 0.0033 P8 Cb GC CACTTAAAAA (3) 1.6 0.0016 P8 Cb GC GGTGTTAATG (4) 1.6 0.0016 Cb medulloblastoma TGTGTGTGTG (115) 30.1 0.0301 Cb medulloblastoma ATCAAAAAAA (16) 6.9 0.0069 Cb medulloblastoma GGTGTTAATG (4) 4.6 0.0046 Cb medulloblastoma CACTTAAAAA (3) 2.3 0.0023 Cb medulloblastoma GATCAAAAAA (2) 2.3 0.0023 Cb medulloblastoma TGAGCCAACT (2) 2.3 0.0023 P8 GC+1d culture TGTGTGTGTG (115) 27.4 0.0274 P8 GC+1d culture ATCAAAAAAA (16) 4.6 0.0046 P8 GC+1d culture TGTGTGTGTA (16) 4.6 0.0046 P8 GC+1d culture GGTGTTAATG (4) 2.3 0.0023 P8 GC+1d culture CACTTAAAAA (3) 1.1 0.0011 P8 GC+1d culture GATCAAAAAA (2) 1.1 0.0011 P8 GC+1d culture TGAGCCAACT (2) 1.1 0.0011 P8 GC+SHH+1d culture TGTGTGTGTG (115) 28.1 0.0281 P8 GC+SHH+1d culture TGAGCCAACT (2) 4.7 0.0047 P8 GC+SHH+1d culture ATCAAAAAAA (16) 3.5 0.0035 P8 GC+SHH+1d culture GGTGTTAATG (4) 2.3 0.0023 3T3 fibroblasts TGTGTGTGTG (115) 28 0.028 E15 cortex TGAGCCAACT (2) 9.9 0.0099 E15 cortex CACTTAGAAC (2) 4.9 0.0049 E15 cortex TGTGTGTGTA (16) 4.9 0.0049 P1 cortex TGTGTGTGTG (115) 18.2 0.0182 P1 cortex ATCAAAAAAA (16) 9.1 0.0091 P1 cortex GGTGTTAATG (4) 4.5 0.0045 P1 cortex TGAGCCAACT (2) 4.5 0.0045 Hypothalamus TGTGTGTGTG (115) 25.4 0.0254 Hypothalamus ATCAAAAAAA (16) 7.2 0.0072 Hypothalamus CACTTAGAAA 1.8 0.0018 Hypothalamus GATCAAAAAA (2) 1.8 0.0018 Hypothalamus TGAGCCAACT (2) 1.8 0.0018 Hypothalamus TGTGTGTGTA (16) 1.8 0.0018 E12.5 retina TGTGTGTGTG (115) 43.2 0.0432 E12.5 retina GGTGTTAATG (4) 7.5 0.0075 E12.5 retina ATCAAAAAAA (16) 3.8 0.0038 E12.5 retina CACTTAGAAC (2) 1.9 0.0019 E12.5 retina TGAGCCAACT (2) 1.9 0.0019 E14.5 retina TGTGTGTGTG (115) 54.7 0.0547 E14.5 retina ATCAAAAAAA (16) 1.8 0.0018 E14.5 retina GGTGTTAATG (4) 1.8 0.0018 E16.5 retina TGTGTGTGTG (115) 39.8 0.0398 E16.5 retina ATCAAAAAAA (16) 5.4 0.0054 E16.5 retina TGAGCCAACT (2) 3.6 0.0036 E16.5 retina TGTGTGTGTA (16) 1.8 0.0018 E18.5 retina TGTGTGTGTG (115) 47.3 0.0473 E18.5 retina ATCAAAAAAA (16) 5.5 0.0055 E18.5 retina TGAGCCAACT (2) 3.6 0.0036 E18.5 retina CACTTAAAAA (3) 1.8 0.0018 E18.5 retina CACTTAGAAC (2) 1.8 0.0018 E18.5 retina GATCAAAAAA (2) 1.8 0.0018 P0.5 retina TGTGTGTGTG (115) 21.6 0.0216 P0.5 retina TGTGTGTGTA (16) 7.9 0.0079 P0.5 retina ATCAAAAAAA (16) 5.9 0.0059 P0.5 retina GGTGTTAATG (4) 3.9 0.0039 P0.5 retina TGAGCCAACT (2) 3.9 0.0039 P0.5 retina CACTTAAAAA (3) 2 0.002 P0.5 retina CACTTAGAAC (2) 2 0.002 P0.5 retina GAAATGCCTG (5) 2 0.002 P2.5 retina TGTGTGTGTG (115) 35.2 0.0352 P2.5 retina TGAGCCAACT (2) 7 0.007 P2.5 retina CACTTAGAAC (2) 3.5 0.0035 P2.5 retina ATCAAAAAAA (16) 1.8 0.0018 P4.5 retina TGTGTGTGTG (115) 47.6 0.0476 P4.5 retina TGAGCCAACT (2) 5.9 0.0059 P4.5 retina ATCAAAAAAA (16) 2 0.002 P4.5 retina CACTTAGAAC (2) 2 0.002 P4.5 retina GAAATGCCTG (5) 2 0.002 P4.5 retina TGTGTGTGTA (16) 2 0.002 P6.5 retina TGTGTGTGTG (115) 41.7 0.0417 P6.5 retina CACTTAGAAC (2) 6.7 0.0067 P6.5 retina ATCAAAAAAA (16) 5 0.005 P6.5 retina TGTGTGTGTA (16) 5 0.005 P6.5 retina CACTTAGAAA 1.7 0.0017 P6.5 retina GGTGTTAATG (4) 1.7 0.0017 P6.5 retina TGAGCCAACT (2) 1.7 0.0017 P10.5 crx- retina TGTGTGTGTG (115) 59.4 0.0594 P10.5 crx- retina TGTGTGTGTA (16) 5.6 0.0056 P10.5 crx- retina GGTGTTAATG (4) 3.7 0.0037 P10.5 crx- retina ATCAAAAAAA (16) 1.9 0.0019 P10.5 crx- retina CACTTAGAAA 1.9 0.0019 P10.5 crx- retina CACTTAGAAC (2) 1.9 0.0019 P10.5 crx- retina TGAGCCAACT (2) 1.9 0.0019 P10.5 crx+ retina TGTGTGTGTG (115) 44.2 0.0442 P10.5 crx+ retina ATCAAAAAAA (16) 13.5 0.0135 P10.5 crx+ retina CACTTAGAAC (2) 7.7 0.0077 P10.5 crx+ retina GGTGTTAATG (4) 1.9 0.0019 P10.5 crx+ retina TGAGCCAACT (2) 1.9 0.0019 Adult retinal TGTGTGTGTG (115) 53.7 0.0537 Adult retinal CACTTAGAAC (2) 13 0.013 Adult retinal TGTGTGTGTA (16) 7.4 0.0074 Adult retinal TCAGTGTCTG (6) 3.7 0.0037 Adult retinal TGAGCCAACT (2) 3.7 0.0037 Adult retinal ATCAAAAAAA (16) 1.9 0.0019 Adult retinal CACTTAGAAA 1.9 0.0019 Adult retinal GATCAAAAAA (2) 1.9 0.0019 ONL TGTGTGTGTG (115) 23 0.023 ONL CACTTAGAAC (2) 3.8 0.0038 ONL TGTGTGTGTA (16) 3.8 0.0038 ONL GGTGTTAATG (4) 1.9 0.0019 ONL TGAGCCAACT (2) 1.9 0.0019