Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.270393	Mfap1	microfibrillar-associated protein 1	2		67532
Gene Ontology	extracellular matrix | extracellular matrix structural constituent
Human Homolog	MFAP1[microfibrillar-associated protein 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 162 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAAAAAAAAA (658) 203.9 0.2039 P8 Cb GC TGGTTGCTGG (369) 68.5 0.0685 P8 Cb GC TAATAAATAA (12) 19.6 0.0196 P8 Cb GC GAGGTGGAAG (6) 8.2 0.0082 P8 Cb GC AGATGTATTT (3) 4.9 0.0049 P8 Cb GC CCTTCAGTCC (5) 3.3 0.0033 P8 Cb GC GATGAGGATG (8) 3.3 0.0033 P8 Cb GC AAAAACAAAA (12) 1.6 0.0016 P8 Cb GC GGCATCCTGG (4) 1.6 0.0016 P8 Cb GC GTTCTTGTAT (2) 1.6 0.0016 Cb medulloblastoma AAAAAAAAAA (658) 797.8 0.7978 Cb medulloblastoma TGGTTGCTGG (369) 113.3 0.1133 Cb medulloblastoma AAAAACAAAA (12) 37 0.037 Cb medulloblastoma AGATGTATTT (3) 9.2 0.0092 Cb medulloblastoma TAATAAATAA (12) 6.9 0.0069 Cb medulloblastoma CCACGGTTTT 2.3 0.0023 Cb medulloblastoma GTGGCAGACA (2) 2.3 0.0023 P8 GC+1d culture AAAAAAAAAA (658) 204.3 0.2043 P8 GC+1d culture TGGTTGCTGG (369) 57.1 0.0571 P8 GC+1d culture TAATAAATAA (12) 32 0.032 P8 GC+1d culture GAGGTGGAAG (6) 9.1 0.0091 P8 GC+1d culture AAAAACAAAA (12) 8 0.008 P8 GC+1d culture AGATGTATTT (3) 6.8 0.0068 P8 GC+1d culture CCTTCAGTCC (5) 5.7 0.0057 P8 GC+1d culture GGCATCCTGG (4) 2.3 0.0023 P8 GC+1d culture GTGGCAGACA (2) 2.3 0.0023 P8 GC+1d culture GTTCTTGTAT (2) 2.3 0.0023 P8 GC+SHH+1d culture AAAAAAAAAA (658) 278.7 0.2787 P8 GC+SHH+1d culture TGGTTGCTGG (369) 89 0.089 P8 GC+SHH+1d culture TAATAAATAA (12) 32.8 0.0328 P8 GC+SHH+1d culture AAAAACAAAA (12) 14.1 0.0141 P8 GC+SHH+1d culture GAGGTGGAAG (6) 11.7 0.0117 P8 GC+SHH+1d culture AGATGTATTT (3) 10.5 0.0105 P8 GC+SHH+1d culture CCTTCAGTCC (5) 4.7 0.0047 P8 GC+SHH+1d culture GTGGCAGACA (2) 4.7 0.0047 P8 GC+SHH+1d culture CCACGGTTTT 1.2 0.0012 3T3 fibroblasts TGGTTGCTGG (369) 220.8 0.2208 3T3 fibroblasts AAAAAAAAAA (658) 28 0.028 3T3 fibroblasts GAGGTGGAAG (6) 3.5 0.0035 3T3 fibroblasts GATGAGGATG (8) 3.5 0.0035 3T3 fibroblasts GTGGCAGACA (2) 3.5 0.0035 E15 cortex TGGTTGCTGG (369) 277.1 0.2771 E15 cortex AAAAAAAAAA (658) 212.8 0.2128 E15 cortex GAGGTGGAAG (6) 9.9 0.0099 E15 cortex GATGAGGATG (8) 9.9 0.0099 E15 cortex AAAAACAAAA (12) 4.9 0.0049 E15 cortex AGATGTATTT (3) 4.9 0.0049 E15 cortex CCACGGTTTT 4.9 0.0049 E15 cortex GGCATTTCCT (3) 4.9 0.0049 E15 cortex GGGCCAAGAG (3) 4.9 0.0049 E15 cortex GTGGCAGACA (2) 4.9 0.0049 P1 cortex AAAAAAAAAA (658) 245.4 0.2454 P1 cortex TGGTTGCTGG (369) 86.4 0.0864 P1 cortex AGATGTATTT (3) 9.1 0.0091 P1 cortex AAAAACAAAA (12) 4.5 0.0045 P1 cortex GTTCTTGTAT (2) 4.5 0.0045 Hypothalamus TGGTTGCTGG (369) 349.6 0.3496 Hypothalamus AAAAAAAAAA (658) 123.2 0.1232 Hypothalamus TAATAAATAA (12) 43.5 0.0435 Hypothalamus AAAAACAAAA (12) 3.6 0.0036 Hypothalamus AGATGTATTT (3) 3.6 0.0036 Hypothalamus GAGGTGGAAG (6) 3.6 0.0036 Hypothalamus GGCATTTCCT (3) 3.6 0.0036 Hypothalamus GTGGCAGACA (2) 3.6 0.0036 Hypothalamus CAGAGTCAGA (5) 1.8 0.0018 Hypothalamus CCAAGTGTTC (3) 1.8 0.0018 Hypothalamus CCACGGTTTT 1.8 0.0018 Hypothalamus GATGAGGATG (8) 1.8 0.0018 E12.5 retina TGGTTGCTGG (369) 157.7 0.1577 E12.5 retina AAAAAAAAAA (658) 138.9 0.1389 E12.5 retina TAATAAATAA (12) 39.4 0.0394 E12.5 retina AAAAACAAAA (12) 13.1 0.0131 E12.5 retina AGATGTATTT (3) 7.5 0.0075 E12.5 retina GAGGTGGAAG (6) 7.5 0.0075 E12.5 retina CCTTCAGTCC (5) 3.8 0.0038 E12.5 retina CCAAGTGTTC (3) 1.9 0.0019 E14.5 retina TGGTTGCTGG (369) 936.5 0.9365 E14.5 retina AAAAAAAAAA (658) 94.7 0.0947 E14.5 retina TAATAAATAA (12) 60.1 0.0601 E14.5 retina AGATGTATTT (3) 10.9 0.0109 E14.5 retina AAAAACAAAA (12) 5.5 0.0055 E16.5 retina TGGTTGCTGG (369) 767.9 0.7679 E16.5 retina AAAAAAAAAA (658) 43.5 0.0435 E16.5 retina TAATAAATAA (12) 36.2 0.0362 E16.5 retina AGATGTATTT (3) 7.2 0.0072 E16.5 retina CCACGGTTTT 3.6 0.0036 E16.5 retina GAGGTGGAAG (6) 3.6 0.0036 E16.5 retina GTGGCAGACA (2) 3.6 0.0036 E16.5 retina CAGAGTCAGA (5) 1.8 0.0018 E16.5 retina GAAGTGGGAA (4) 1.8 0.0018 E16.5 retina GGGCCAAGAG (3) 1.8 0.0018 E18.5 retina AAAAAAAAAA (658) 374.7 0.3747 E18.5 retina TGGTTGCTGG (369) 252.8 0.2528 E18.5 retina TAATAAATAA (12) 92.8 0.0928 E18.5 retina AGATGTATTT (3) 10.9 0.0109 E18.5 retina GAGGTGGAAG (6) 9.1 0.0091 E18.5 retina AAAAACAAAA (12) 3.6 0.0036 P0.5 retina TGGTTGCTGG (369) 190.4 0.1904 P0.5 retina AAAAAAAAAA (658) 117.8 0.1178 P0.5 retina TAATAAATAA (12) 27.5 0.0275 P0.5 retina GAGGTGGAAG (6) 9.8 0.0098 P0.5 retina GTGGCAGACA (2) 7.9 0.0079 P0.5 retina AGATGTATTT (3) 3.9 0.0039 P0.5 retina CCTTCAGTCC (5) 3.9 0.0039 P0.5 retina AAAAACAAAA (12) 2 0.002 P0.5 retina CCACGGTTTT 2 0.002 P2.5 retina AAAAAAAAAA (658) 329.1 0.3291 P2.5 retina TGGTTGCTGG (369) 165.4 0.1654 P2.5 retina TAATAAATAA (12) 72.2 0.0722 P2.5 retina GAGGTGGAAG (6) 12.3 0.0123 P2.5 retina AGATGTATTT (3) 8.8 0.0088 P2.5 retina CCTTCAGTCC (5) 5.3 0.0053 P2.5 retina AAAAACAAAA (12) 3.5 0.0035 P2.5 retina GATGAGGATG (8) 3.5 0.0035 P2.5 retina CAGAGTCAGA (5) 1.8 0.0018 P2.5 retina CCAAGTGTTC (3) 1.8 0.0018 P4.5 retina AAAAAAAAAA (658) 283.3 0.2833 P4.5 retina TGGTTGCTGG (369) 150.6 0.1506 P4.5 retina TAATAAATAA (12) 77.3 0.0773 P4.5 retina AGATGTATTT (3) 9.9 0.0099 P4.5 retina GAGGTGGAAG (6) 5.9 0.0059 P4.5 retina AAAAACAAAA (12) 4 0.004 P4.5 retina GTGGCAGACA (2) 4 0.004 P4.5 retina GGCATCCTGG (4) 2 0.002 P4.5 retina GGGCCAAGAG (3) 2 0.002 P6.5 retina AAAAAAAAAA (658) 266.8 0.2668 P6.5 retina TGGTTGCTGG (369) 156.7 0.1567 P6.5 retina TAATAAATAA (12) 68.4 0.0684 P6.5 retina AGATGTATTT (3) 5 0.005 P6.5 retina GAGGTGGAAG (6) 3.3 0.0033 P6.5 retina CCAAGTGTTC (3) 1.7 0.0017 P6.5 retina CCTTCAGTCC (5) 1.7 0.0017 P6.5 retina GATGAGGATG (8) 1.7 0.0017 P10.5 crx- retina TGGTTGCTGG (369) 280.5 0.2805 P10.5 crx- retina AAAAAAAAAA (658) 44.6 0.0446 P10.5 crx- retina AGATGTATTT (3) 11.1 0.0111 P10.5 crx- retina TAATAAATAA (12) 11.1 0.0111 P10.5 crx- retina AAAAACAAAA (12) 1.9 0.0019 P10.5 crx- retina CCAAGTGTTC (3) 1.9 0.0019 P10.5 crx+ retina TGGTTGCTGG (369) 101.9 0.1019 P10.5 crx+ retina AAAAAAAAAA (658) 96.1 0.0961 P10.5 crx+ retina TAATAAATAA (12) 15.4 0.0154 P10.5 crx+ retina GTGGCAGACA (2) 5.8 0.0058 P10.5 crx+ retina AGATGTATTT (3) 1.9 0.0019 P10.5 crx+ retina CCACGGTTTT 1.9 0.0019 P10.5 crx+ retina CCTTCAGTCC (5) 1.9 0.0019 P10.5 crx+ retina GAAGTGGGAA (4) 1.9 0.0019 Adult retinal TGGTTGCTGG (369) 214.8 0.2148 Adult retinal AAAAAAAAAA (658) 57.4 0.0574 Adult retinal GTGGCAGACA (2) 5.6 0.0056 Adult retinal TAATAAATAA (12) 5.6 0.0056 Adult retinal GAGGTGGAAG (6) 3.7 0.0037 Adult retinal AAAAACAAAA (12) 1.9 0.0019 Adult retinal CCACGGTTTT 1.9 0.0019 ONL TGGTTGCTGG (369) 398.4 0.3984 ONL AAAAAAAAAA (658) 103.4 0.1034 ONL TAATAAATAA (12) 23 0.023 ONL AGATGTATTT (3) 7.7 0.0077 ONL AAAAACAAAA (12) 3.8 0.0038 ONL CCACGGTTTT 3.8 0.0038 ONL CCTTCAGTCC (5) 1.9 0.0019 ONL GTGGCAGACA (2) 1.9 0.0019