Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.271222
Eif5
eukaryotic translation initiation factor 5
12
12 F1 (12 57.0 cM)
217869
Mm.271222
2810011H21Rik
RIKEN cDNA 2810011H21 gene
12
72643
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
Total 6 In Situ Hybridization Images
Images -- Click to Enlarge
SAGE Tags
Total 145 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
GAGGTTAACC
(
3
)
9.8
0.0098
P8 Cb GC
GGGTTTGGAA (
6
)
8.2
0.0082
P8 Cb GC
CTTGACACAC
(
2
)
6.5
0.0065
P8 Cb GC
TTTCTTTCGG
(
3
)
6.5
0.0065
P8 Cb GC
AACCATAGGG
(
3
)
3.3
0.0033
P8 Cb GC
GCCTCTTGGG (
6
)
3.3
0.0033
P8 Cb GC
TTGGTAATTT (
4
)
3.3
0.0033
P8 Cb GC
CTGTGGAAGA (
8
)
1.6
0.0016
Cb medulloblastoma
GAGGTTAACC
(
3
)
13.9
0.0139
Cb medulloblastoma
GGGTTTGGAA (
6
)
9.2
0.0092
Cb medulloblastoma
CTTGACACAC
(
2
)
4.6
0.0046
Cb medulloblastoma
AGGGAATAAG (
4
)
2.3
0.0023
Cb medulloblastoma
TTTCTTTCGG
(
3
)
2.3
0.0023
P8 GC+1d culture
GAGGTTAACC
(
3
)
13.7
0.0137
P8 GC+1d culture
GGGTTTGGAA (
6
)
8
0.008
P8 GC+1d culture
GCCTCTTGGG (
6
)
5.7
0.0057
P8 GC+1d culture
CTGTGGAAGA (
8
)
4.6
0.0046
P8 GC+1d culture
CTTGACACTC (
4
)
1.1
0.0011
P8 GC+1d culture
TTTCTTTCGG
(
3
)
1.1
0.0011
P8 GC+SHH+1d culture
GAGGTTAACC
(
3
)
11.7
0.0117
P8 GC+SHH+1d culture
TTTCTTTCGG
(
3
)
7
0.007
P8 GC+SHH+1d culture
GCCTCTTGGG (
6
)
5.9
0.0059
P8 GC+SHH+1d culture
GGGTTTGGAA (
6
)
5.9
0.0059
P8 GC+SHH+1d culture
AGGGAATAAG (
4
)
2.3
0.0023
P8 GC+SHH+1d culture
CTGTGGAAGA (
8
)
2.3
0.0023
P8 GC+SHH+1d culture
CTTGACACAC
(
2
)
1.2
0.0012
P8 GC+SHH+1d culture
CTTGACACTC (
4
)
1.2
0.0012
3T3 fibroblasts
CTTGACACAC
(
2
)
7
0.007
3T3 fibroblasts
GCCTCTTGGG (
6
)
7
0.007
3T3 fibroblasts
CAAAAGGTCT
(
4
)
3.5
0.0035
3T3 fibroblasts
CTGTGGAAGA (
8
)
3.5
0.0035
3T3 fibroblasts
TTTCTTTCGG
(
3
)
3.5
0.0035
E15 cortex
GGGTCCTCTT (
6
)
14.8
0.0148
E15 cortex
CAAAAGGTCT
(
4
)
4.9
0.0049
E15 cortex
CTGTGGAAGA (
8
)
4.9
0.0049
E15 cortex
GGGTTTGGAA (
6
)
4.9
0.0049
P1 cortex
CTGTGGAAGA (
8
)
4.5
0.0045
P1 cortex
CTTGACACAC
(
2
)
4.5
0.0045
P1 cortex
GGGTTTGGAA (
6
)
4.5
0.0045
Hypothalamus
GAGGTTAACC
(
3
)
12.7
0.0127
Hypothalamus
AGTAAAACCC
(
2
)
3.6
0.0036
Hypothalamus
CTTGACACAC
(
2
)
3.6
0.0036
Hypothalamus
GCCTCTTGGG (
6
)
3.6
0.0036
Hypothalamus
GGGTTTGGAA (
6
)
1.8
0.0018
Hypothalamus
TTGGTAATTT (
4
)
1.8
0.0018
Hypothalamus
TTTCTTTCGG
(
3
)
1.8
0.0018
E12.5 retina
GAGGTTAACC
(
3
)
15
0.015
E12.5 retina
GGGTTTGGAA (
6
)
11.3
0.0113
E12.5 retina
GCCTCTTGGG (
6
)
9.4
0.0094
E12.5 retina
CTGTGGAAGA (
8
)
7.5
0.0075
E12.5 retina
GGGTCCTCTT (
6
)
7.5
0.0075
E12.5 retina
CAAAAGGTCT
(
4
)
1.9
0.0019
E12.5 retina
CTTGACACTC (
4
)
1.9
0.0019
E12.5 retina
TTTCTTTCGG
(
3
)
1.9
0.0019
E14.5 retina
GAGGTTAACC
(
3
)
12.8
0.0128
E14.5 retina
CTTGACACAC
(
2
)
3.6
0.0036
E14.5 retina
CAAAAGGTCT
(
4
)
1.8
0.0018
E14.5 retina
GGGTTTGGAA (
6
)
1.8
0.0018
E14.5 retina
TTGGATGGAT
(
4
)
1.8
0.0018
E14.5 retina
TTGGTAATTT (
4
)
1.8
0.0018
E14.5 retina
TTTCTTTCGG
(
3
)
1.8
0.0018
E16.5 retina
CTTGACACAC
(
2
)
9.1
0.0091
E16.5 retina
GAGGTTAACC
(
3
)
5.4
0.0054
E16.5 retina
GGGTTTGGAA (
6
)
5.4
0.0054
E16.5 retina
TTGGTAATTT (
4
)
5.4
0.0054
E16.5 retina
CTGTGGAAGA (
8
)
3.6
0.0036
E16.5 retina
TGTTCACTGT
(
2
)
3.6
0.0036
E16.5 retina
TTTCTTTCGG
(
3
)
3.6
0.0036
E16.5 retina
AGTAAAACCC
(
2
)
1.8
0.0018
E16.5 retina
GGGTCCTCTT (
6
)
1.8
0.0018
E16.5 retina
TTGGATGGAT
(
4
)
1.8
0.0018
E18.5 retina
GGGTCCTCTT (
6
)
16.4
0.0164
E18.5 retina
GAGGTTAACC
(
3
)
9.1
0.0091
E18.5 retina
GCCTCTTGGG (
6
)
3.6
0.0036
E18.5 retina
GGGTTTGGAA (
6
)
3.6
0.0036
E18.5 retina
TTGGTAATTT (
4
)
3.6
0.0036
E18.5 retina
AGTAAAACCC
(
2
)
1.8
0.0018
E18.5 retina
CTGTGGAAGA (
8
)
1.8
0.0018
E18.5 retina
CTTGACACAC
(
2
)
1.8
0.0018
E18.5 retina
TTTCTTTCGG
(
3
)
1.8
0.0018
P0.5 retina
GAGGTTAACC
(
3
)
15.7
0.0157
P0.5 retina
GGGTCCTCTT (
6
)
3.9
0.0039
P0.5 retina
GGGTTTGGAA (
6
)
3.9
0.0039
P0.5 retina
AAGTATTTTG (
4
)
2
0.002
P0.5 retina
CTTGACACAC
(
2
)
2
0.002
P0.5 retina
CTTGACACTC (
4
)
2
0.002
P0.5 retina
GCCTCTTGGG (
6
)
2
0.002
P2.5 retina
GAGGTTAACC
(
3
)
14.1
0.0141
P2.5 retina
GGGTTTGGAA (
6
)
12.3
0.0123
P2.5 retina
GCCTCTTGGG (
6
)
10.6
0.0106
P2.5 retina
GGGTCCTCTT (
6
)
10.6
0.0106
P2.5 retina
CAAAAGGTCT
(
4
)
5.3
0.0053
P2.5 retina
CTGTGGAAGA (
8
)
3.5
0.0035
P2.5 retina
CTTGACACAC
(
2
)
3.5
0.0035
P2.5 retina
AGTAAAACCC
(
2
)
1.8
0.0018
P2.5 retina
TTGGTAATTT (
4
)
1.8
0.0018
P2.5 retina
TTTCTTTCGG
(
3
)
1.8
0.0018
P4.5 retina
GGGTTTGGAA (
6
)
15.9
0.0159
P4.5 retina
GAGGTTAACC
(
3
)
11.9
0.0119
P4.5 retina
TTTCTTTCGG
(
3
)
5.9
0.0059
P4.5 retina
AAGTATTTTG (
4
)
4
0.004
P4.5 retina
GCCTCTTGGG (
6
)
4
0.004
P4.5 retina
GGGTCCTCTT (
6
)
4
0.004
P4.5 retina
CTTGACACAC
(
2
)
2
0.002
P4.5 retina
TGGTTAATTT
(
3
)
2
0.002
P4.5 retina
TTGGATGGAT
(
4
)
2
0.002
P4.5 retina
TTGGTAATTT (
4
)
2
0.002
P6.5 retina
GAGGTTAACC
(
3
)
15
0.015
P6.5 retina
GGGTTTGGAA (
6
)
11.7
0.0117
P6.5 retina
GGGTCCTCTT (
6
)
6.7
0.0067
P6.5 retina
CTTGACACAC
(
2
)
5
0.005
P6.5 retina
CTTGACACTC (
4
)
5
0.005
P6.5 retina
CTGTGGAAGA (
8
)
3.3
0.0033
P6.5 retina
AGTAAAACCC
(
2
)
1.7
0.0017
P6.5 retina
CAAAAGGTCT
(
4
)
1.7
0.0017
P6.5 retina
GCCTCTTGGG (
6
)
1.7
0.0017
P10.5 crx- retina
GAGGTTAACC
(
3
)
14.9
0.0149
P10.5 crx- retina
GGGTCCTCTT (
6
)
5.6
0.0056
P10.5 crx- retina
AACCATAGGG
(
3
)
1.9
0.0019
P10.5 crx- retina
CTGTGGAAGA (
8
)
1.9
0.0019
P10.5 crx- retina
GCCTCTTGGG (
6
)
1.9
0.0019
P10.5 crx- retina
GGGTTTGGAA (
6
)
1.9
0.0019
P10.5 crx- retina
TTTCTTTCGG
(
3
)
1.9
0.0019
P10.5 crx+ retina
GAGGTTAACC
(
3
)
9.6
0.0096
P10.5 crx+ retina
GGGTCCTCTT (
6
)
5.8
0.0058
P10.5 crx+ retina
CTTGACACAC
(
2
)
3.8
0.0038
P10.5 crx+ retina
GGGTTTGGAA (
6
)
3.8
0.0038
P10.5 crx+ retina
TGGTTAATTT
(
3
)
3.8
0.0038
P10.5 crx+ retina
TTTCTTTCGG
(
3
)
3.8
0.0038
P10.5 crx+ retina
GCCTCTTGGG (
6
)
1.9
0.0019
Adult retinal
GCCTCTTGGG (
6
)
5.6
0.0056
Adult retinal
AAGTATTTTG (
4
)
1.9
0.0019
Adult retinal
CTGTGGAAGA (
8
)
1.9
0.0019
Adult retinal
CTTGACACAC
(
2
)
1.9
0.0019
Adult retinal
CTTGACACTC (
4
)
1.9
0.0019
Adult retinal
GAGGTTAACC
(
3
)
1.9
0.0019
Adult retinal
GGGTCCTCTT (
6
)
1.9
0.0019
Adult retinal
TGTTCACTGT
(
2
)
1.9
0.0019
Adult retinal
TTTCTTTCGG
(
3
)
1.9
0.0019
ONL
GAGGTTAACC
(
3
)
5.7
0.0057
ONL
GGGTCCTCTT (
6
)
5.7
0.0057
ONL
CTGTGGAAGA (
8
)
3.8
0.0038
ONL
GGGTTTGGAA (
6
)
3.8
0.0038
ONL
GCCTCTTGGG (
6
)
1.9
0.0019
ONL
TTGGTAATTT (
4
)
1.9
0.0019
