Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.271642	AI845704	expressed sequence AI845704	1		98447
Mm.271642	Ipo9	importin 9	1	1 E4	226432
Gene Ontology	cytoplasm | histone binding | nuclear pore | nucleus | protein stabilization | protein transport | protein transporter activity | protein-nucleus import | protein-nucleus import, docking | RAN protein binding | ribosomal protein-nucleus import | ribosome biogenesis and assembly | transport
Human Homolog	IPO9[importin 9]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 160 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAAAAAAAAA (658) 203.9 0.2039 P8 Cb GC TGGTTGCTGG (369) 68.5 0.0685 P8 Cb GC GTGGCTCATA (21) 22.8 0.0228 P8 Cb GC GGTTTGTTCA (5) 8.2 0.0082 P8 Cb GC TATTTTTATA (12) 4.9 0.0049 P8 Cb GC TATTTTTCTA (13) 4.9 0.0049 P8 Cb GC TATTTTTTTA (7) 3.3 0.0033 P8 Cb GC CAGATGAGGC (7) 1.6 0.0016 P8 Cb GC GGTCACTTTT (2) 1.6 0.0016 P8 Cb GC TTGGAACCTA (2) 1.6 0.0016 Cb medulloblastoma AAAAAAAAAA (658) 797.8 0.7978 Cb medulloblastoma TGGTTGCTGG (369) 113.3 0.1133 Cb medulloblastoma GTGGCTCATA (21) 23.1 0.0231 Cb medulloblastoma GGTTTGTTCA (5) 6.9 0.0069 Cb medulloblastoma CAGATGAGGC (7) 2.3 0.0023 Cb medulloblastoma GAGGCCAATG (6) 2.3 0.0023 Cb medulloblastoma TATTTTTCTA (13) 2.3 0.0023 P8 GC+1d culture AAAAAAAAAA (658) 204.3 0.2043 P8 GC+1d culture TGGTTGCTGG (369) 57.1 0.0571 P8 GC+1d culture GTGGCTCATA (21) 26.3 0.0263 P8 GC+1d culture GGTTTGTTCA (5) 5.7 0.0057 P8 GC+1d culture TATTTTTCTA (13) 3.4 0.0034 P8 GC+1d culture TATTTTTATA (12) 2.3 0.0023 P8 GC+1d culture CATACACAAA (6) 1.1 0.0011 P8 GC+1d culture GAGGCCAATG (6) 1.1 0.0011 P8 GC+1d culture TATTTTTTTA (7) 1.1 0.0011 P8 GC+SHH+1d culture AAAAAAAAAA (658) 278.7 0.2787 P8 GC+SHH+1d culture TGGTTGCTGG (369) 89 0.089 P8 GC+SHH+1d culture GTGGCTCATA (21) 24.6 0.0246 P8 GC+SHH+1d culture GGTTTGTTCA (5) 10.5 0.0105 P8 GC+SHH+1d culture TATTTTTCTA (13) 10.5 0.0105 P8 GC+SHH+1d culture TATTTTTTTA (7) 3.5 0.0035 P8 GC+SHH+1d culture TTTGACATCT (3) 2.3 0.0023 P8 GC+SHH+1d culture TATTTTTATA (12) 1.2 0.0012 P8 GC+SHH+1d culture TTGGAACCTA (2) 1.2 0.0012 3T3 fibroblasts TGGTTGCTGG (369) 220.8 0.2208 3T3 fibroblasts AAAAAAAAAA (658) 28 0.028 3T3 fibroblasts GTGGCTCATA (21) 24.5 0.0245 3T3 fibroblasts GGTTTGTTCA (5) 3.5 0.0035 E15 cortex TGGTTGCTGG (369) 277.1 0.2771 E15 cortex AAAAAAAAAA (658) 212.8 0.2128 E15 cortex GTGGCTCATA (21) 39.6 0.0396 E15 cortex GGTTTGTTCA (5) 14.8 0.0148 E15 cortex GAGGAACTGG (8) 4.9 0.0049 E15 cortex GGGCGGGGGG (11) 4.9 0.0049 E15 cortex GGTCACTTTT (2) 4.9 0.0049 P1 cortex AAAAAAAAAA (658) 245.4 0.2454 P1 cortex TGGTTGCTGG (369) 86.4 0.0864 P1 cortex GTGGCTCATA (21) 27.3 0.0273 P1 cortex GGTTTGTTCA (5) 13.6 0.0136 P1 cortex TATTTTTCTA (13) 9.1 0.0091 P1 cortex CATACACAAA (6) 4.5 0.0045 P1 cortex GTACAAAACA (5) 4.5 0.0045 Hypothalamus TGGTTGCTGG (369) 349.6 0.3496 Hypothalamus AAAAAAAAAA (658) 123.2 0.1232 Hypothalamus GTGGCTCATA (21) 30.8 0.0308 Hypothalamus CAGATGATGC (6) 3.6 0.0036 Hypothalamus CATACACAAA (6) 3.6 0.0036 Hypothalamus GAGGAACTGG (8) 3.6 0.0036 Hypothalamus GGTTTGTTCA (5) 3.6 0.0036 Hypothalamus GAGGCCAATG (6) 1.8 0.0018 Hypothalamus TATTTTTATA (12) 1.8 0.0018 Hypothalamus TTTGACATCT (3) 1.8 0.0018 E12.5 retina TGGTTGCTGG (369) 157.7 0.1577 E12.5 retina AAAAAAAAAA (658) 138.9 0.1389 E12.5 retina GTGGCTCATA (21) 82.6 0.0826 E12.5 retina TATTTTTCTA (13) 15 0.015 E12.5 retina CATACACAAA (6) 5.6 0.0056 E12.5 retina GGTTTGTTCA (5) 5.6 0.0056 E12.5 retina GGGCGGGGGG (11) 1.9 0.0019 E14.5 retina TGGTTGCTGG (369) 936.5 0.9365 E14.5 retina AAAAAAAAAA (658) 94.7 0.0947 E14.5 retina GTGGCTCATA (21) 49.2 0.0492 E14.5 retina TATTTTTCTA (13) 16.4 0.0164 E14.5 retina CAGATGATGC (6) 12.8 0.0128 E14.5 retina TATTTTTTTA (7) 7.3 0.0073 E14.5 retina GAGGCCAATG (6) 1.8 0.0018 E14.5 retina GGTTTGTTCA (5) 1.8 0.0018 E14.5 retina GTTCACTTTT (3) 1.8 0.0018 E14.5 retina TATTTTTATA (12) 1.8 0.0018 E16.5 retina TGGTTGCTGG (369) 767.9 0.7679 E16.5 retina AAAAAAAAAA (658) 43.5 0.0435 E16.5 retina GTGGCTCATA (21) 34.4 0.0344 E16.5 retina GGTTTGTTCA (5) 12.7 0.0127 E16.5 retina CAGATGATGC (6) 5.4 0.0054 E16.5 retina TTTGACATCT (3) 3.6 0.0036 E16.5 retina TATTTTTATA (12) 1.8 0.0018 E16.5 retina TATTTTTCTA (13) 1.8 0.0018 E18.5 retina AAAAAAAAAA (658) 374.7 0.3747 E18.5 retina TGGTTGCTGG (369) 252.8 0.2528 E18.5 retina GTGGCTCATA (21) 47.3 0.0473 E18.5 retina GGTTTGTTCA (5) 9.1 0.0091 E18.5 retina GTTCACTTTT (3) 5.5 0.0055 E18.5 retina TATTTTTCTA (13) 5.5 0.0055 E18.5 retina TATTTTTATA (12) 3.6 0.0036 E18.5 retina CAGATGAGGC (7) 1.8 0.0018 E18.5 retina CAGATGATGC (6) 1.8 0.0018 E18.5 retina CATACACAAA (6) 1.8 0.0018 E18.5 retina GGTCACTTTT (2) 1.8 0.0018 P0.5 retina TGGTTGCTGG (369) 190.4 0.1904 P0.5 retina AAAAAAAAAA (658) 117.8 0.1178 P0.5 retina GTGGCTCATA (21) 41.2 0.0412 P0.5 retina TATTTTTCTA (13) 7.9 0.0079 P0.5 retina GGTTTGTTCA (5) 5.9 0.0059 P0.5 retina GTTCACTTTT (3) 3.9 0.0039 P0.5 retina CAGATGATGC (6) 2 0.002 P0.5 retina TATTTTTTTA (7) 2 0.002 P0.5 retina TTTGACATCT (3) 2 0.002 P2.5 retina AAAAAAAAAA (658) 329.1 0.3291 P2.5 retina TGGTTGCTGG (369) 165.4 0.1654 P2.5 retina GTGGCTCATA (21) 49.3 0.0493 P2.5 retina GGTTTGTTCA (5) 12.3 0.0123 P2.5 retina TATTTTTCTA (13) 7 0.007 P2.5 retina CAGATGATGC (6) 3.5 0.0035 P2.5 retina GGGCGGGGGG (11) 3.5 0.0035 P2.5 retina TATTTTTATA (12) 3.5 0.0035 P2.5 retina CATACACAAA (6) 1.8 0.0018 P2.5 retina TATTTTTTTA (7) 1.8 0.0018 P4.5 retina AAAAAAAAAA (658) 283.3 0.2833 P4.5 retina TGGTTGCTGG (369) 150.6 0.1506 P4.5 retina GTGGCTCATA (21) 53.5 0.0535 P4.5 retina GGTTTGTTCA (5) 7.9 0.0079 P4.5 retina TATTTTTCTA (13) 7.9 0.0079 P4.5 retina GAGGCCAATG (6) 2 0.002 P4.5 retina TATTTTTATA (12) 2 0.002 P4.5 retina TATTTTTTTA (7) 2 0.002 P6.5 retina AAAAAAAAAA (658) 266.8 0.2668 P6.5 retina TGGTTGCTGG (369) 156.7 0.1567 P6.5 retina GTGGCTCATA (21) 33.3 0.0333 P6.5 retina TATTTTTCTA (13) 11.7 0.0117 P6.5 retina GGTTTGTTCA (5) 6.7 0.0067 P6.5 retina CATACACAAA (6) 1.7 0.0017 P6.5 retina GGTCACTTTT (2) 1.7 0.0017 P6.5 retina TATTTTTATA (12) 1.7 0.0017 P10.5 crx- retina TGGTTGCTGG (369) 280.5 0.2805 P10.5 crx- retina AAAAAAAAAA (658) 44.6 0.0446 P10.5 crx- retina GTGGCTCATA (21) 33.4 0.0334 P10.5 crx- retina GGTTTGTTCA (5) 5.6 0.0056 P10.5 crx- retina TATTTTTCTA (13) 1.9 0.0019 P10.5 crx+ retina TGGTTGCTGG (369) 101.9 0.1019 P10.5 crx+ retina AAAAAAAAAA (658) 96.1 0.0961 P10.5 crx+ retina GTGGCTCATA (21) 38.4 0.0384 P10.5 crx+ retina GGTTTGTTCA (5) 9.6 0.0096 P10.5 crx+ retina CATACACAAA (6) 3.8 0.0038 P10.5 crx+ retina GTACAAAACA (5) 1.9 0.0019 P10.5 crx+ retina TTGGAACCTA (2) 1.9 0.0019 Adult retinal TGGTTGCTGG (369) 214.8 0.2148 Adult retinal AAAAAAAAAA (658) 57.4 0.0574 Adult retinal GTGGCTCATA (21) 24.1 0.0241 Adult retinal TATTTTTCTA (13) 5.6 0.0056 Adult retinal GGTTTGTTCA (5) 3.7 0.0037 Adult retinal GGTCACTTTT (2) 1.9 0.0019 Adult retinal GTACAAAACA (5) 1.9 0.0019 Adult retinal TATTTTTATA (12) 1.9 0.0019 ONL TGGTTGCTGG (369) 398.4 0.3984 ONL AAAAAAAAAA (658) 103.4 0.1034 ONL GTGGCTCATA (21) 49.8 0.0498 ONL GGTTTGTTCA (5) 3.8 0.0038 ONL CATACACAAA (6) 1.9 0.0019 ONL TATTTTTCTA (13) 1.9 0.0019