Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.271745
D030005H02Rik
RIKEN cDNA D030005H02 gene
8
319908
Mm.271745
AI121036
expressed sequence AI121036
8
101996
Mm.271745
Nrp1
neuropilin 1
8
8 73.0 cM
18186
Mm.271745
C85351
expressed sequence C85351
8
97464
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 90 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
TGATCATACT (
6
)
6.5
0.0065
P8 Cb GC
GGGCAGGGGT (
6
)
1.6
0.0016
P8 Cb GC
GGGCAGGGTT
(
6
)
1.6
0.0016
P8 Cb GC
TAAAGAAAAA (
7
)
1.6
0.0016
P8 Cb GC
TTTTGTACCC
(
4
)
1.6
0.0016
Cb medulloblastoma
GGGCAGGGTT
(
6
)
9.2
0.0092
Cb medulloblastoma
TACAGCCTGC (
5
)
2.3
0.0023
Cb medulloblastoma
TGATCATACT (
6
)
2.3
0.0023
P8 GC+1d culture
GGGCAGGGTT
(
6
)
8
0.008
P8 GC+1d culture
TCTCTCTGTT (
5
)
2.3
0.0023
P8 GC+1d culture
TGATCATACT (
6
)
2.3
0.0023
P8 GC+1d culture
ATCAAGGGGG (
6
)
1.1
0.0011
P8 GC+1d culture
TGACCTGTAG
(
4
)
1.1
0.0011
P8 GC+1d culture
TTTTGTACCC
(
4
)
1.1
0.0011
P8 GC+SHH+1d culture
GGGCAGGGTT
(
6
)
4.7
0.0047
P8 GC+SHH+1d culture
TGATCATACT (
6
)
4.7
0.0047
P8 GC+SHH+1d culture
TCTCTCTGTT (
5
)
3.5
0.0035
P8 GC+SHH+1d culture
TACAGCCTGC (
5
)
1.2
0.0012
P8 GC+SHH+1d culture
TGACCTGTAG
(
4
)
1.2
0.0012
3T3 fibroblasts
TCTCTCTGTT (
5
)
17.5
0.0175
3T3 fibroblasts
TGACCTGTAG
(
4
)
7
0.007
3T3 fibroblasts
GGGCAGGGTT
(
6
)
3.5
0.0035
E15 cortex
TGACCTGTAG
(
4
)
9.9
0.0099
E15 cortex
TAAAGAAAAA (
7
)
4.9
0.0049
E15 cortex
TACAGCCTGC (
5
)
4.9
0.0049
P1 cortex
TCTCTCTGTT (
5
)
31.8
0.0318
P1 cortex
GGGCAGGGTT
(
6
)
4.5
0.0045
P1 cortex
TGATCATACT (
6
)
4.5
0.0045
Hypothalamus
GGGCAGGGTT
(
6
)
3.6
0.0036
Hypothalamus
TGATCATACT (
6
)
3.6
0.0036
Hypothalamus
AAGCAATAAT
(
4
)
1.8
0.0018
E12.5 retina
TGACCTGTAG
(
4
)
9.4
0.0094
E12.5 retina
TGATCATACT (
6
)
3.8
0.0038
E12.5 retina
GGGCAGGGTT
(
6
)
1.9
0.0019
E12.5 retina
TAAAGAAAAA (
7
)
1.9
0.0019
E12.5 retina
TACAGCCTGC (
5
)
1.9
0.0019
E12.5 retina
TCTCTCTGTT (
5
)
1.9
0.0019
E14.5 retina
TGATCATACT (
6
)
5.5
0.0055
E14.5 retina
ATCAAGGGGG (
6
)
1.8
0.0018
E14.5 retina
TAAAGAAAAA (
7
)
1.8
0.0018
E14.5 retina
TGACCTGTAG
(
4
)
1.8
0.0018
E14.5 retina
TTTTGTACCC
(
4
)
1.8
0.0018
E16.5 retina
TGATCATACT (
6
)
14.5
0.0145
E16.5 retina
GGGCAGGGTT
(
6
)
5.4
0.0054
E16.5 retina
ATCAAGGGGG (
6
)
1.8
0.0018
E16.5 retina
TACAGCCTGC (
5
)
1.8
0.0018
E16.5 retina
TGACCTGTAG
(
4
)
1.8
0.0018
E18.5 retina
GGGCAGGGTT
(
6
)
12.7
0.0127
E18.5 retina
TGATCATACT (
6
)
5.5
0.0055
E18.5 retina
ATCAAGGGGG (
6
)
1.8
0.0018
E18.5 retina
TTTTGTACCC
(
4
)
1.8
0.0018
P0.5 retina
TGATCATACT (
6
)
3.9
0.0039
P0.5 retina
AAGTCAGTCT (
5
)
2
0.002
P0.5 retina
GGGCAGGGTT
(
6
)
2
0.002
P0.5 retina
TCTCTCTGTT (
5
)
2
0.002
P2.5 retina
TGATCATACT (
6
)
12.3
0.0123
P2.5 retina
GGGCAGGGTT
(
6
)
7
0.007
P2.5 retina
TGACCTGTAG
(
4
)
1.8
0.0018
P2.5 retina
TTTTGTACCC
(
4
)
1.8
0.0018
P4.5 retina
TGATCATACT (
6
)
19.8
0.0198
P4.5 retina
GGGCAGGGTT
(
6
)
9.9
0.0099
P4.5 retina
TGACCTGTAG
(
4
)
4
0.004
P4.5 retina
TTTTGTACCC
(
4
)
4
0.004
P4.5 retina
ATCAAGGGGG (
6
)
2
0.002
P4.5 retina
TAAAGAAAAA (
7
)
2
0.002
P6.5 retina
GGGCAGGGTT
(
6
)
6.7
0.0067
P6.5 retina
TGATCATACT (
6
)
5
0.005
P6.5 retina
GGGCAGGGGT (
6
)
3.3
0.0033
P6.5 retina
ATCAAGGGGG (
6
)
1.7
0.0017
P6.5 retina
TAAAGAAAAA (
7
)
1.7
0.0017
P6.5 retina
TGACCTGTAG
(
4
)
1.7
0.0017
P10.5 crx- retina
GGGCAGGGTT
(
6
)
3.7
0.0037
P10.5 crx- retina
AAGCAATAAT
(
4
)
1.9
0.0019
P10.5 crx- retina
AAGTCAGTCT (
5
)
1.9
0.0019
P10.5 crx- retina
TGACCTGTAG
(
4
)
1.9
0.0019
P10.5 crx- retina
TGATCATACT (
6
)
1.9
0.0019
P10.5 crx- retina
TTTTGTACCC
(
4
)
1.9
0.0019
P10.5 crx+ retina
GGGCAGGGGT (
6
)
1.9
0.0019
P10.5 crx+ retina
TAAAGAAAAA (
7
)
1.9
0.0019
P10.5 crx+ retina
TCTCTCTGTT (
5
)
1.9
0.0019
Adult retinal
GGGCAGGGTT
(
6
)
5.6
0.0056
Adult retinal
TCTCTCTGTT (
5
)
1.9
0.0019
Adult retinal
TGACCTGTAG
(
4
)
1.9
0.0019
Adult retinal
TGATCATACT (
6
)
1.9
0.0019
ONL
AAGTCAGTCT (
5
)
1.9
0.0019
ONL
GGGCAGGGTT
(
6
)
1.9
0.0019
ONL
TAAAGAAAAA (
7
)
1.9
0.0019
ONL
TACAGCCTGC (
5
)
1.9
0.0019
ONL
TCTCTCTGTT (
5
)
1.9
0.0019
ONL
TGATCATACT (
6
)
1.9
0.0019
