Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.271796	Matn1	matrilin 1, cartilage matrix protein 1	4	4 61.0 cM	17180
Gene Ontology	collagen binding | extracellular matrix | extracellular matrix organization and biogenesis | extracellular matrix structural constituent | extracellular space | structural molecule activity
Human Homolog	MATN1[matrilin 1, cartilage matrix protein]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 54 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GGGTGGGAAG (7) 6.5 0.0065 P8 Cb GC TGTGTGCCTG (6) 3.3 0.0033 P8 Cb GC AAAGTCACTT (3) 1.6 0.0016 P8 GC+1d culture GGGTGGGAAG (7) 12.6 0.0126 P8 GC+1d culture AAAGTCACTT (3) 2.3 0.0023 P8 GC+SHH+1d culture GGGTGGGAAG (7) 18.7 0.0187 P8 GC+SHH+1d culture AAAGTCACTT (3) 1.2 0.0012 P8 GC+SHH+1d culture CTCACAGGCA (3) 1.2 0.0012 3T3 fibroblasts GGGTGGGAAG (7) 28 0.028 3T3 fibroblasts TGTGTGCCTG (6) 3.5 0.0035 E15 cortex GGGTGGGAAG (7) 29.7 0.0297 E15 cortex AAAGTCACTT (3) 9.9 0.0099 E15 cortex TGAGTTTCAG (4) 4.9 0.0049 P1 cortex AAAGTCACTT (3) 4.5 0.0045 P1 cortex GGGTGGGAAG (7) 4.5 0.0045 Hypothalamus GGGTGGGAAG (7) 3.6 0.0036 Hypothalamus CTCACAGGCA (3) 1.8 0.0018 E12.5 retina GGGTGGGAAG (7) 18.8 0.0188 E12.5 retina AAAGTCACTT (3) 7.5 0.0075 E12.5 retina CTCACAGGCA (3) 1.9 0.0019 E14.5 retina GGGTGGGAAG (7) 14.6 0.0146 E16.5 retina GGGTGGGAAG (7) 16.3 0.0163 E16.5 retina CCACGAGGGT (3) 3.6 0.0036 E16.5 retina AAAGTCACTT (3) 1.8 0.0018 E18.5 retina GGGTGGGAAG (7) 7.3 0.0073 E18.5 retina AAAGTCACTT (3) 3.6 0.0036 P0.5 retina GGGTGGGAAG (7) 11.8 0.0118 P0.5 retina CTCACAGGCA (3) 5.9 0.0059 P0.5 retina AAAGTCACTT (3) 2 0.002 P0.5 retina TGTGTGCCTG (6) 2 0.002 P2.5 retina GGGTGGGAAG (7) 28.2 0.0282 P2.5 retina CTCACAGGCA (3) 1.8 0.0018 P4.5 retina GGGTGGGAAG (7) 13.9 0.0139 P4.5 retina CTCACAGGCA (3) 2 0.002 P6.5 retina GGGTGGGAAG (7) 23.3 0.0233 P6.5 retina CTCACAGGCA (3) 6.7 0.0067 P6.5 retina AAAGTCACTT (3) 3.3 0.0033 P6.5 retina TGTGTGCCTG (6) 3.3 0.0033 P6.5 retina CCACGAGGGT (3) 1.7 0.0017 P10.5 crx- retina GGGTGGGAAG (7) 5.6 0.0056 P10.5 crx- retina TGTGTGCCTG (6) 1.9 0.0019 P10.5 crx+ retina GGGTGGGAAG (7) 9.6 0.0096 P10.5 crx+ retina AAAGTCACTT (3) 1.9 0.0019 P10.5 crx+ retina CCACGAGGGT (3) 1.9 0.0019 P10.5 crx+ retina CTCACAGGCA (3) 1.9 0.0019 P10.5 crx+ retina TGAGTTTCAG (4) 1.9 0.0019 P10.5 crx+ retina TGTGTGCCTG (6) 1.9 0.0019 Adult retinal CTCACAGGCA (3) 7.4 0.0074 Adult retinal GGGTGGGAAG (7) 3.7 0.0037 Adult retinal TGTGTGCCTG (6) 3.7 0.0037 ONL GGGTGGGAAG (7) 5.7 0.0057 ONL AAAGTCACTT (3) 3.8 0.0038 ONL TGAGTTTCAG (4) 3.8 0.0038 ONL CTCACAGGCA (3) 1.9 0.0019