Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.271985
Snapc3
small nuclear RNA activating complex, polypeptide 3
4
77634
Mm.271985
E030018J20Rik
RIKEN cDNA E030018J20 gene
4
319879
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 120 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
GTTGGTCTGT (
7
)
11.4
0.0114
P8 Cb GC
AACTTAAAAA (
12
)
4.9
0.0049
P8 Cb GC
GTCAGAGCAG (
3
)
3.3
0.0033
P8 Cb GC
TCACAGGTGT
(
6
)
3.3
0.0033
P8 Cb GC
AAGCTTGGCT
(
3
)
1.6
0.0016
P8 Cb GC
TCGGGTGGGT (
6
)
1.6
0.0016
P8 Cb GC
TGGGTTCCTT (
4
)
1.6
0.0016
P8 Cb GC
TTTGTGTGTG (
9
)
1.6
0.0016
Cb medulloblastoma
AACTTAAAAA (
12
)
67.1
0.0671
Cb medulloblastoma
GTTGGTCTGT (
7
)
9.2
0.0092
Cb medulloblastoma
TCGGGTGGGT (
6
)
2.3
0.0023
Cb medulloblastoma
TGGGTTCCTT (
4
)
2.3
0.0023
Cb medulloblastoma
TTTGTGTGTG (
9
)
2.3
0.0023
P8 GC+1d culture
GTTGGTCTGT (
7
)
16
0.016
P8 GC+1d culture
AACTTAAAAA (
12
)
8
0.008
P8 GC+1d culture
TCACAGGTGT
(
6
)
3.4
0.0034
P8 GC+1d culture
TCGGGTGGGT (
6
)
2.3
0.0023
P8 GC+1d culture
TTTCTTTTGT
(
5
)
2.3
0.0023
P8 GC+1d culture
TGGGTTCCTT (
4
)
1.1
0.0011
P8 GC+SHH+1d culture
GTTGGTCTGT (
7
)
19.9
0.0199
P8 GC+SHH+1d culture
AACTTAAAAA (
12
)
5.9
0.0059
P8 GC+SHH+1d culture
TCACAGGTGT
(
6
)
3.5
0.0035
P8 GC+SHH+1d culture
ACCAAAGCAA
(
4
)
1.2
0.0012
P8 GC+SHH+1d culture
TCGGGTGGGT (
6
)
1.2
0.0012
P8 GC+SHH+1d culture
TTGGTACTGG
(
6
)
1.2
0.0012
P8 GC+SHH+1d culture
TTTGTGTGTG (
9
)
1.2
0.0012
3T3 fibroblasts
GTCATAGCTG (
590
)
10.5
0.0105
3T3 fibroblasts
GTTGGTCTGT (
7
)
10.5
0.0105
3T3 fibroblasts
GTCAGAGCAG (
3
)
3.5
0.0035
E15 cortex
GTTGGTCTGT (
7
)
9.9
0.0099
E15 cortex
GTCATAGCTG (
590
)
4.9
0.0049
E15 cortex
TCGGGTGGGT (
6
)
4.9
0.0049
E15 cortex
TGGGTTCCTT (
4
)
4.9
0.0049
E15 cortex
TTTCTTTTGT
(
5
)
4.9
0.0049
P1 cortex
AACTTAAAAA (
12
)
18.2
0.0182
P1 cortex
GTTGGTCTGT (
7
)
9.1
0.0091
P1 cortex
TGGGTTCCTT (
4
)
9.1
0.0091
P1 cortex
TTTGTGTGTG (
9
)
4.5
0.0045
Hypothalamus
AACTTAAAAA (
12
)
12.7
0.0127
Hypothalamus
GTTGGTCTGT (
7
)
3.6
0.0036
Hypothalamus
AAGCTTGGCT
(
3
)
1.8
0.0018
E12.5 retina
GTTGGTCTGT (
7
)
5.6
0.0056
E12.5 retina
TTTGTGTGTG (
9
)
3.8
0.0038
E12.5 retina
ATGCTTGTAA (
6
)
1.9
0.0019
E12.5 retina
TCACAGGTGT
(
6
)
1.9
0.0019
E12.5 retina
TCGGGTGGGT (
6
)
1.9
0.0019
E14.5 retina
AACTTAAAAA (
12
)
9.1
0.0091
E14.5 retina
ACCAAAGCAA
(
4
)
3.6
0.0036
E14.5 retina
GTTGGTCTGT (
7
)
3.6
0.0036
E14.5 retina
TCGGGTGGGT (
6
)
3.6
0.0036
E14.5 retina
TCACAGGTGT
(
6
)
1.8
0.0018
E16.5 retina
AACTTAAAAA (
12
)
9.1
0.0091
E16.5 retina
GTTGGTCTGT (
7
)
7.2
0.0072
E16.5 retina
TCACCGTCTG (
6
)
5.4
0.0054
E16.5 retina
TCGGGTGGGT (
6
)
5.4
0.0054
E16.5 retina
ATGCTTGTAA (
6
)
3.6
0.0036
E16.5 retina
TCACAGGTGT
(
6
)
1.8
0.0018
E16.5 retina
TGGGTTCCTT (
4
)
1.8
0.0018
E18.5 retina
GTTGGTCTGT (
7
)
9.1
0.0091
E18.5 retina
AACTTAAAAA (
12
)
5.5
0.0055
E18.5 retina
TCACAGGTGT
(
6
)
3.6
0.0036
E18.5 retina
AAGCTTGGCT
(
3
)
1.8
0.0018
E18.5 retina
TACATACATT
(
2
)
1.8
0.0018
E18.5 retina
TATGGATACC
(
4
)
1.8
0.0018
E18.5 retina
TCGGGTGGGT (
6
)
1.8
0.0018
E18.5 retina
TTTCTTTTGT
(
5
)
1.8
0.0018
P0.5 retina
GTTGGTCTGT (
7
)
13.7
0.0137
P0.5 retina
TCACAGGTGT
(
6
)
13.7
0.0137
P0.5 retina
GTCATAGCTG (
590
)
3.9
0.0039
P0.5 retina
AACTTAAAAA (
12
)
2
0.002
P0.5 retina
TCGGGTGGGT (
6
)
2
0.002
P2.5 retina
GTTGGTCTGT (
7
)
5.3
0.0053
P2.5 retina
ATGCTTGTAA (
6
)
3.5
0.0035
P2.5 retina
AACTTAAAAA (
12
)
1.8
0.0018
P2.5 retina
GTCATAGCTG (
590
)
1.8
0.0018
P2.5 retina
TTTGTGTGTG (
9
)
1.8
0.0018
P4.5 retina
AACTTAAAAA (
12
)
9.9
0.0099
P4.5 retina
GTTGGTCTGT (
7
)
7.9
0.0079
P4.5 retina
TCACAGGTGT
(
6
)
5.9
0.0059
P4.5 retina
ATGTTATATT
(
2
)
2
0.002
P4.5 retina
GTCATAGCTG (
590
)
2
0.002
P4.5 retina
TTTGTGTGTG (
9
)
2
0.002
P6.5 retina
AACTTAAAAA (
12
)
11.7
0.0117
P6.5 retina
TCACAGGTGT
(
6
)
6.7
0.0067
P6.5 retina
GTCATAGCTG (
590
)
3.3
0.0033
P6.5 retina
AAGCTTGGCT
(
3
)
1.7
0.0017
P6.5 retina
GTTGGTCTGT (
7
)
1.7
0.0017
P6.5 retina
TCGGGTGGGT (
6
)
1.7
0.0017
P10.5 crx- retina
AACTTAAAAA (
12
)
13
0.013
P10.5 crx- retina
GTTGGTCTGT (
7
)
5.6
0.0056
P10.5 crx- retina
ATGTTATATT
(
2
)
3.7
0.0037
P10.5 crx- retina
TATGGATACC
(
4
)
3.7
0.0037
P10.5 crx- retina
TCACAGGTGT
(
6
)
3.7
0.0037
P10.5 crx- retina
ACCAAAGCAA
(
4
)
1.9
0.0019
P10.5 crx- retina
GTCAGAGCAG (
3
)
1.9
0.0019
P10.5 crx- retina
TTTCTTTTGT
(
5
)
1.9
0.0019
P10.5 crx+ retina
AACTTAAAAA (
12
)
7.7
0.0077
P10.5 crx+ retina
TCACAGGTGT
(
6
)
7.7
0.0077
P10.5 crx+ retina
GTTGGTCTGT (
7
)
5.8
0.0058
P10.5 crx+ retina
ACCAAAGCAA
(
4
)
1.9
0.0019
P10.5 crx+ retina
TACATACATT
(
2
)
1.9
0.0019
P10.5 crx+ retina
TCGGGTGGGT (
6
)
1.9
0.0019
Adult retinal
GTTGGTCTGT (
7
)
5.6
0.0056
Adult retinal
AACTTAAAAA (
12
)
3.7
0.0037
Adult retinal
TCACAGGTGT
(
6
)
3.7
0.0037
Adult retinal
ACCAAAGCAA
(
4
)
1.9
0.0019
Adult retinal
GTCATAGCTG (
590
)
1.9
0.0019
Adult retinal
TACATACATT
(
2
)
1.9
0.0019
Adult retinal
TCGGGTGGGT (
6
)
1.9
0.0019
Adult retinal
TTGGTACTGG
(
6
)
1.9
0.0019
Adult retinal
TTTGTGTGTG (
9
)
1.9
0.0019
ONL
GTCATAGCTG (
590
)
5.7
0.0057
ONL
TGAAATGTAA
(
7
)
5.7
0.0057
ONL
TTTGTGTGTG (
9
)
5.7
0.0057
ONL
ACCAAAGCAA
(
4
)
3.8
0.0038
ONL
GTTGGTCTGT (
7
)
3.8
0.0038
ONL
TCGGGTGGGT (
6
)
3.8
0.0038
ONL
ATGCTTGTAA (
6
)
1.9
0.0019
ONL
TTGGTACTGG
(
6
)
1.9
0.0019
ONL
TTTCTTTTGT
(
5
)
1.9
0.0019
