Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.272361	Psmc5	protease (prosome, macropain) 26S subunit, ATPase 5	11		19184
Gene Ontology	ATP binding | ATPase activity | cytoplasm | cytosol | hydrolase activity | negative regulation of transcription | nucleotide binding | nucleus | proteasome complex (sensu Eukarya) | protein binding | protein catabolism | transcription cofactor activity | transcription factor binding | transcription factor TFIIH complex | transcription from Pol II promoter
Human Homolog	PSMC5[proteasome (prosome, macropain) 26S subunit, ATPase, 5]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 71 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC ATAAAAAAAA (33) 11.4 0.0114 P8 Cb GC TCCATCAAGA (3) 9.8 0.0098 P8 Cb GC GACGAGATGG (9) 3.3 0.0033 P8 Cb GC GCTTACTTAA (6) 3.3 0.0033 P8 Cb GC GCCCCACCCC (7) 1.6 0.0016 P8 Cb GC TGACATCCAT (3) 1.6 0.0016 Cb medulloblastoma ATAAAAAAAA (33) 25.4 0.0254 Cb medulloblastoma TCCATCAAGA (3) 9.2 0.0092 Cb medulloblastoma GACGAGATGG (9) 2.3 0.0023 Cb medulloblastoma GCTACTAATA 2.3 0.0023 P8 GC+1d culture TCCATCAAGA (3) 22.8 0.0228 P8 GC+1d culture ATAAAAAAAA (33) 5.7 0.0057 P8 GC+1d culture TGACATCCAT (3) 5.7 0.0057 P8 GC+1d culture GCCCCACCCC (7) 2.3 0.0023 P8 GC+1d culture GCTTACTTAA (6) 2.3 0.0023 P8 GC+1d culture GCTACTAATA 1.1 0.0011 P8 GC+SHH+1d culture ATAAAAAAAA (33) 21.1 0.0211 P8 GC+SHH+1d culture TCCATCAAGA (3) 17.6 0.0176 P8 GC+SHH+1d culture TGACATCCAT (3) 5.9 0.0059 P8 GC+SHH+1d culture GCTTACTTAA (6) 2.3 0.0023 P8 GC+SHH+1d culture GCCCCACCCC (7) 1.2 0.0012 P8 GC+SHH+1d culture TCCAATCAAA (2) 1.2 0.0012 3T3 fibroblasts TCCATCAAGA (3) 10.5 0.0105 E15 cortex GACGAGATGG (9) 9.9 0.0099 E15 cortex TCCATCAAGA (3) 4.9 0.0049 P1 cortex TCCATCAAGA (3) 4.5 0.0045 Hypothalamus TCCATCAAGA (3) 21.7 0.0217 Hypothalamus ATAAAAAAAA (33) 7.2 0.0072 Hypothalamus TGACATCCAT (3) 1.8 0.0018 E12.5 retina TCCATCAAGA (3) 35.7 0.0357 E12.5 retina ATAAAAAAAA (33) 11.3 0.0113 E12.5 retina TGACATCCAT (3) 5.6 0.0056 E14.5 retina TCCATCAAGA (3) 21.9 0.0219 E14.5 retina ATAAAAAAAA (33) 16.4 0.0164 E14.5 retina GACGAGATGG (9) 3.6 0.0036 E16.5 retina TCCATCAAGA (3) 18.1 0.0181 E16.5 retina GACGAGATGG (9) 7.2 0.0072 E16.5 retina ATAAAAAAAA (33) 5.4 0.0054 E16.5 retina GCTTACTTAA (6) 1.8 0.0018 E16.5 retina TCCAATCAAA (2) 1.8 0.0018 E18.5 retina ATAAAAAAAA (33) 30.9 0.0309 E18.5 retina TCCATCAAGA (3) 5.5 0.0055 E18.5 retina GACGAGATGG (9) 3.6 0.0036 E18.5 retina GCTTACTTAA (6) 3.6 0.0036 E18.5 retina GCCCCACCCC (7) 1.8 0.0018 E18.5 retina TCCAATCAAA (2) 1.8 0.0018 P0.5 retina TCCATCAAGA (3) 5.9 0.0059 P0.5 retina ATAAAAAAAA (33) 2 0.002 P0.5 retina GCTACTAATA 2 0.002 P0.5 retina GCTTACTTAA (6) 2 0.002 P0.5 retina TGACATCCAT (3) 2 0.002 P2.5 retina TCCATCAAGA (3) 21.1 0.0211 P2.5 retina ATAAAAAAAA (33) 14.1 0.0141 P2.5 retina TGACATCCAT (3) 3.5 0.0035 P4.5 retina ATAAAAAAAA (33) 21.8 0.0218 P4.5 retina TCCATCAAGA (3) 21.8 0.0218 P6.5 retina TCCATCAAGA (3) 26.7 0.0267 P6.5 retina ATAAAAAAAA (33) 10 0.01 P6.5 retina GACGAGATGG (9) 1.7 0.0017 P6.5 retina GCTTACTTAA (6) 1.7 0.0017 P6.5 retina TGACATCCAT (3) 1.7 0.0017 P10.5 crx- retina TCCATCAAGA (3) 11.1 0.0111 P10.5 crx- retina ATAAAAAAAA (33) 5.6 0.0056 P10.5 crx- retina GCCCCACCCC (7) 1.9 0.0019 P10.5 crx- retina GCTTACTTAA (6) 1.9 0.0019 P10.5 crx+ retina TCCATCAAGA (3) 15.4 0.0154 P10.5 crx+ retina ATAAAAAAAA (33) 3.8 0.0038 Adult retinal TCCATCAAGA (3) 16.7 0.0167 Adult retinal GCTACTAATA 1.9 0.0019 ONL TCCATCAAGA (3) 9.6 0.0096 ONL ATAAAAAAAA (33) 1.9 0.0019