Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.272920	Smad5	MAD homolog 5 (Drosophila)	13	13 35.0 cM	17129
Gene Ontology	angiogenesis | BMP signaling pathway | common-partner SMAD protein phosphorylation | intracellular | organogenesis | protein binding | regulation of transcription, DNA-dependent | SMAD protein heteromerization | transforming growth factor beta receptor signaling pathway
Human Homolog	SMAD5[SMAD, mothers against DPP homolog 5 (Drosophila)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 75 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CAATTTTGTA (5) CCTGTAATCC (2) GCATTTACCT GGATCGAGGC TGCCACCATT TGTGCTGGGC (2) 17.9 0.0179 Cb medulloblastoma CCTGTAATCC (2) TGCCACCATT 16.2 0.0162 P8 GC+1d culture CAATTTTGTA (5) CCTGTAATCC (2) CCTTTGATTC GGGAGCCTTA TGTGCTGGGC (2) 11.3 0.0113 P8 GC+SHH+1d culture CCATATATAT CCTGTAATCC (2) GGGAGCCTTA TGCCACCATT 9.4 0.0094 3T3 fibroblasts CCTGTAATCC (2) CCTTTGATTC GGGAGCCTTA TGCCACCATT TGTGCTGGGC (2) 28 0.028 E15 cortex CCTGTAATCC (2) CCTTTGATTC GGGAGCCTTA TGTGCTGGGC (2) 19.6 0.0196 P1 cortex CAATTTTGTA (5) CCATATATAT CCTGTAATCC (2) GCATTTACCT 27.1 0.0271 Hypothalamus CCTGTAATCC (2) TGCCACCATT 9 0.009 E12.5 retina CCTGTAATCC (2) TGCCACCATT 5.7 0.0057 E14.5 retina CAATTTTGTA (5) CCTGTAATCC (2) CCTTTGATTC GGGAGCCTTA TGACTTTCCA TGTGCTGGGC (2) 16.3 0.0163 E16.5 retina CCTGTAATCC (2) TGCCACCATT 5.4 0.0054 E18.5 retina CAATTTTGTA (5) CCTGTAATCC (2) GGGAGCCTTA TGACTTTCCA TGTGCTGGGC (2) 9 0.009 P0.5 retina CCTGTAATCC (2) TGTGCTGGGC (2) 5.9 0.0059 P2.5 retina CCTGTAATCC (2) CCTTTGATTC GGGAGCCTTA TGCCACCATT 17.6 0.0176 P4.5 retina CCATATATAT CCTGTAATCC (2) GGATCGAGGC GGGAGCCTTA TGCCACCATT 13.9 0.0139 P6.5 retina CAATTTTGTA (5) CCTGTAATCC (2) TGCCACCATT TGTGCTGGGC (2) 11.7 0.0117 P10.5 crx- retina CCTGTAATCC (2) TGCCACCATT TGTGCTGGGC (2) 11.2 0.0112 P10.5 crx+ retina CAATTTTGTA (5) CCTGTAATCC (2) GGGAGCCTTA TGCCACCATT 9.5 0.0095 Adult retinal CCTGTAATCC (2) GGGAGCCTTA TGACTTTCCA TGCCACCATT 9.4 0.0094 ONL CAATTTTGTA (5) CCTGTAATCC (2) 5.7 0.0057