Mouse Retina SAGE Library    [Home]    [Libraries]    [Images]

Gene:              Accession:    
e.g., Rho or Rhodopsin e.g., BG297543 batch search
Tag:        Cytoband (Mm):    
e.g., CCCAGTTCAC e.g., 6 E3
Unigene:        Cytoband (Hs):    
e.g., Mm.2965 batch search e.g., 3q21-q24


 UniGene  Symbol  Name  Chr  Cytoband  LocusLink 
 Mm.273379 Snx5sorting nexin 5 2  2 80.0 cM  69178 
 Gene Ontology intracellular signaling cascade | protein transport | transport
 Human Homolog SNX5[sorting nexin 5]
 Clusters 
   Neighbors    

No In Situ Hybridization images could be found.



SAGE Tags

Total 128 tags found with positive counts.

  all tags    reliable tags    sum by library with all tags    sum by library with reliable tags  
 Library  Tag (Other Genes)  Normalized Count  % in library 
P8 Cb GCTAAAAAAAAA (196)47.30.0473
P8 Cb GCTTAAAAAAAA (80)13.10.0131
P8 Cb GCGCGACGCGGG (6)9.80.0098
P8 Cb GCTGAATAAATA3.30.0033
P8 Cb GCTTACCAAAAA3.30.0033
P8 Cb GCTCTGTCTGAA (7)1.60.0016
Cb medulloblastomaTAAAAAAAAA (196)106.40.1064
Cb medulloblastomaTTAAAAAAAA (80)53.20.0532
Cb medulloblastomaTCTGTCTGAA (7)4.60.0046
Cb medulloblastomaACAGTGCCTA (2)2.30.0023
Cb medulloblastomaGCGACGCGGG (6)2.30.0023
Cb medulloblastomaGCTGTCGGGT (2)2.30.0023
Cb medulloblastomaTGTGTTTGTG (12)2.30.0023
Cb medulloblastomaTTACCAAAAA2.30.0023
P8 GC+1d cultureTAAAAAAAAA (196)66.20.0662
P8 GC+1d cultureTTAAAAAAAA (80)28.50.0285
P8 GC+1d cultureTGTGTTTGTG (12)5.70.0057
P8 GC+1d cultureACAGTGCCTA (2)4.60.0046
P8 GC+1d cultureGCGACGCGGG (6)2.30.0023
P8 GC+1d cultureTGAATAAATA2.30.0023
P8 GC+1d cultureCTTTATTCCA (4)1.10.0011
P8 GC+1d cultureGCTGTCGGGT (2)1.10.0011
P8 GC+1d cultureTTACCATATG1.10.0011
P8 GC+SHH+1d cultureTAAAAAAAAA (196)93.70.0937
P8 GC+SHH+1d cultureTTAAAAAAAA (80)340.034
P8 GC+SHH+1d cultureGCGACGCGGG (6)15.20.0152
P8 GC+SHH+1d cultureTCTGTCTGAA (7)2.30.0023
P8 GC+SHH+1d cultureTGAATAAATA2.30.0023
P8 GC+SHH+1d cultureTGTGTTTGTG (12)2.30.0023
P8 GC+SHH+1d cultureCTTTATTCCA (4)1.20.0012
P8 GC+SHH+1d cultureGCTGTCGGGT (2)1.20.0012
P8 GC+SHH+1d cultureTTACCAAAAA1.20.0012
3T3 fibroblastsCTTTATTCCA (4)42.10.0421
3T3 fibroblastsGCGACGCGGG (6)70.007
3T3 fibroblastsTAAAAAAAAA (196)70.007
E15 cortexTAAAAAAAAA (196)9.90.0099
E15 cortexTCTGTCTGAA (7)9.90.0099
E15 cortexTTAAAAAAAA (80)4.90.0049
P1 cortexTAAAAAAAAA (196)500.05
P1 cortexACAGTGCCTA (2)13.60.0136
P1 cortexTTAAAAAAAA (80)13.60.0136
P1 cortexGCGACGCGGG (6)9.10.0091
P1 cortexTGTGTTTGTG (12)9.10.0091
HypothalamusTAAAAAAAAA (196)32.60.0326
HypothalamusTTAAAAAAAA (80)19.90.0199
HypothalamusGCGACGCGGG (6)16.30.0163
HypothalamusTCTGTCTGAA (7)3.60.0036
HypothalamusAAGTCTTTCT (5)1.80.0018
HypothalamusACAGTGCCTA (2)1.80.0018
HypothalamusTGAATAAATA1.80.0018
HypothalamusTTACCAAAAA1.80.0018
E12.5 retinaTAAAAAAAAA (196)24.40.0244
E12.5 retinaTTAAAAAAAA (80)11.30.0113
E12.5 retinaGCGACGCGGG (6)7.50.0075
E12.5 retinaTCTGTCTGAA (7)3.80.0038
E12.5 retinaAAGTCTTTCT (5)1.90.0019
E12.5 retinaTGCTGGGATT (12)1.90.0019
E12.5 retinaTGTGTTTGTG (12)1.90.0019
E14.5 retinaTAAAAAAAAA (196)41.90.0419
E14.5 retinaTTAAAAAAAA (80)16.40.0164
E14.5 retinaGCGACGCGGG (6)5.50.0055
E14.5 retinaAAGCTTTCTC (6)1.80.0018
E14.5 retinaGCTGTCGGGT (2)1.80.0018
E14.5 retinaTCTGTCTGAA (7)1.80.0018
E16.5 retinaTAAAAAAAAA (196)23.50.0235
E16.5 retinaTTAAAAAAAA (80)16.30.0163
E16.5 retinaGCGACGCGGG (6)3.60.0036
E16.5 retinaTGTGTTTGTG (12)3.60.0036
E16.5 retinaGCTGTCGGGT (2)1.80.0018
E18.5 retinaTAAAAAAAAA (196)107.30.1073
E18.5 retinaTTAAAAAAAA (80)50.90.0509
E18.5 retinaGCGACGCGGG (6)16.40.0164
E18.5 retinaTGCTGGGATT (12)7.30.0073
E18.5 retinaTGAATAAATA5.50.0055
E18.5 retinaACAGTGCCTA (2)3.60.0036
E18.5 retinaAAGTCTTTCT (5)1.80.0018
E18.5 retinaTCTGTCTGAA (7)1.80.0018
E18.5 retinaTTACCAAAAA1.80.0018
P0.5 retinaTAAAAAAAAA (196)37.30.0373
P0.5 retinaTTAAAAAAAA (80)17.70.0177
P0.5 retinaGCGACGCGGG (6)11.80.0118
P0.5 retinaTGTGTTTGTG (12)7.90.0079
P0.5 retinaTCTGTCTGAA (7)3.90.0039
P0.5 retinaTGAATAAATA20.002
P2.5 retinaTAAAAAAAAA (196)72.20.0722
P2.5 retinaTTAAAAAAAA (80)40.50.0405
P2.5 retinaGCGACGCGGG (6)70.007
P2.5 retinaTGAATAAATA3.50.0035
P2.5 retinaTGTGTTTGTG (12)3.50.0035
P2.5 retinaACAGTGCCTA (2)1.80.0018
P2.5 retinaCTTTATTCCA (4)1.80.0018
P2.5 retinaTGCTGGGATT (12)1.80.0018
P4.5 retinaTAAAAAAAAA (196)122.80.1228
P4.5 retinaTTAAAAAAAA (80)47.60.0476
P4.5 retinaGCGACGCGGG (6)15.90.0159
P4.5 retinaTGAATAAATA40.004
P4.5 retinaGCTGTCGGGT (2)20.002
P6.5 retinaTAAAAAAAAA (196)63.40.0634
P6.5 retinaTTAAAAAAAA (80)16.70.0167
P6.5 retinaGCGACGCGGG (6)8.30.0083
P6.5 retinaTGTGTTTGTG (12)8.30.0083
P6.5 retinaTGAATAAATA50.005
P6.5 retinaTGCTGGGATT (12)1.70.0017
P10.5 crx- retinaTTAAAAAAAA (80)130.013
P10.5 crx- retinaTAAAAAAAAA (196)9.30.0093
P10.5 crx- retinaTGTGTTTGTG (12)3.70.0037
P10.5 crx- retinaAAGCTTTCTC (6)1.90.0019
P10.5 crx- retinaGCGACGCGGG (6)1.90.0019
P10.5 crx- retinaGCTGTCGGGT (2)1.90.0019
P10.5 crx- retinaTTACCATATG1.90.0019
P10.5 crx+ retinaTAAAAAAAAA (196)250.025
P10.5 crx+ retinaGCGACGCGGG (6)7.70.0077
P10.5 crx+ retinaTGTGTTTGTG (12)5.80.0058
P10.5 crx+ retinaTTAAAAAAAA (80)5.80.0058
P10.5 crx+ retinaAAGCTTTCTC (6)1.90.0019
Adult retinalTAAAAAAAAA (196)18.50.0185
Adult retinalTTAAAAAAAA (80)7.40.0074
Adult retinalTGCTGGGATT (12)3.70.0037
Adult retinalGCGACGCGGG (6)1.90.0019
Adult retinalTGTGTTTGTG (12)1.90.0019
ONLTAAAAAAAAA (196)28.70.0287
ONLTTAAAAAAAA (80)7.70.0077
ONLGCGACGCGGG (6)5.70.0057
ONLTGCTGGGATT (12)3.80.0038
ONLAAGTCTTTCT (5)1.90.0019
ONLTCTGTCTGAA (7)1.90.0019
ONLTGTGTTTGTG (12)1.90.0019
ONLTTACCAAAAA1.90.0019