Mouse Retina SAGE Library

[Home]    [Libraries]    [Images]

---

Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

---

UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.273379	Snx5	sorting nexin 5	2	2 80.0 cM	69178
Gene Ontology	intracellular signaling cascade | protein transport | transport
Human Homolog	SNX5[sorting nexin 5]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 34 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TGAATAAATA 3.3 0.0033 P8 Cb GC TTACCAAAAA 3.3 0.0033 Cb medulloblastoma TGTGTTTGTG (2) 2.3 0.0023 Cb medulloblastoma TTACCAAAAA 2.3 0.0023 P8 GC+1d culture TGTGTTTGTG (2) 5.7 0.0057 P8 GC+1d culture TGAATAAATA 2.3 0.0023 P8 GC+1d culture TTACCATATG 1.1 0.0011 P8 GC+SHH+1d culture TGAATAAATA 2.3 0.0023 P8 GC+SHH+1d culture TGTGTTTGTG (2) 2.3 0.0023 P8 GC+SHH+1d culture TTACCAAAAA 1.2 0.0012 P1 cortex TGTGTTTGTG (2) 9.1 0.0091 Hypothalamus AAGTCTTTCT (3) 1.8 0.0018 Hypothalamus TGAATAAATA 1.8 0.0018 Hypothalamus TTACCAAAAA 1.8 0.0018 E12.5 retina AAGTCTTTCT (3) 1.9 0.0019 E12.5 retina TGTGTTTGTG (2) 1.9 0.0019 E16.5 retina TGTGTTTGTG (2) 3.6 0.0036 E18.5 retina TGAATAAATA 5.5 0.0055 E18.5 retina AAGTCTTTCT (3) 1.8 0.0018 E18.5 retina TTACCAAAAA 1.8 0.0018 P0.5 retina TGTGTTTGTG (2) 7.9 0.0079 P0.5 retina TGAATAAATA 2 0.002 P2.5 retina TGAATAAATA 3.5 0.0035 P2.5 retina TGTGTTTGTG (2) 3.5 0.0035 P4.5 retina TGAATAAATA 4 0.004 P6.5 retina TGTGTTTGTG (2) 8.3 0.0083 P6.5 retina TGAATAAATA 5 0.005 P10.5 crx- retina TGTGTTTGTG (2) 3.7 0.0037 P10.5 crx- retina TTACCATATG 1.9 0.0019 P10.5 crx+ retina TGTGTTTGTG (2) 5.8 0.0058 Adult retinal TGTGTTTGTG (2) 1.9 0.0019 ONL AAGTCTTTCT (3) 1.9 0.0019 ONL TGTGTTTGTG (2) 1.9 0.0019 ONL TTACCAAAAA 1.9 0.0019