| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | CTATGGAATT TCTGGCACTG TGCTTAAGCA (2)
| 21.2 | 0.0212 |
| Cb medulloblastoma | CTATGGAATT GCAGGAGCTG TCTGGCACTG
| 20.8 | 0.0208 |
| P8 GC+1d culture | TCAGGCACTG (2) TCTGGCACTG TGCTTAAGCA (2)
| 9.1 | 0.0091 |
| P8 GC+SHH+1d culture | CTATGGAATT TCAGGCACTG (2) TCTGGCACTG TGCTTAAGCA (2)
| 17.6 | 0.0176 |
| 3T3 fibroblasts | TGCTTAAGCA (2)
| 3.5 | 0.0035 |
| E15 cortex | TCTGGCACTG
| 19.8 | 0.0198 |
| P1 cortex | CATCACCGTA CTATGGAATT
| 9 | 0.009 |
| Hypothalamus | CTATGGAATT GCAAGGAGTG GCAGGAGCTG TCTGGCACTG
| 14.5 | 0.0145 |
| E12.5 retina | TCAGGCACTG (2) TCTGGCACTG TGCTTAAGCA (2)
| 18.8 | 0.0188 |
| E14.5 retina | CTATGGAATT TCTGGCACTG TGCTTAAGCA (2)
| 30.9 | 0.0309 |
| E16.5 retina | GCAAGGAGTG GCAGGAGCTG TCTGGCACTG TGCTTAAGCA (2)
| 19.9 | 0.0199 |
| E18.5 retina | GCAAGGAGTG TCTGGCACTG
| 10.9 | 0.0109 |
| P0.5 retina | CATCACCGTA TCTGGCACTG TGCTTAAGCA (2)
| 13.8 | 0.0138 |
| P2.5 retina | GCAAGGAGTG TCTGGCACTG TGCTTAAGCA (2)
| 19.4 | 0.0194 |
| P4.5 retina | CTATGGAATT TCTGGCACTG TGCTTAAGCA (2)
| 15.9 | 0.0159 |
| P6.5 retina | TCTGGCACTG TGCTTAAGCA (2)
| 3.4 | 0.0034 |
| P10.5 crx- retina | CATCACCGTA GCAAGGAGTG TCTGGCACTG TGCTTAAGCA (2)
| 14.9 | 0.0149 |
| P10.5 crx+ retina | GCAAGGAGTG TCTGGCACTG
| 15.4 | 0.0154 |
| Adult retinal | CTATGGAATT TCTGGCACTG
| 9.3 | 0.0093 |
| ONL | CTATGGAATT GCAAGGAGTG
| 3.8 | 0.0038 |