Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.274770	Xist	inactive X specific transcripts	X	X 42.0 cM	213742
Gene Ontology	chromosome | dosage compensation, by inactivation of X chromosome
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

Total 10 In Situ Hybridization Images

Images -- Click to Enlarge

SAGE Tags

Total 100 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TCACAATGAG (2) 9.8 0.0098 P8 Cb GC GAAAACACCT (5) 4.9 0.0049 P8 Cb GC GAAAAAGGAA (9) 3.3 0.0033 P8 Cb GC TGGTTGTTGG (20) 3.3 0.0033 P8 Cb GC AGGAAATGAA (9) 1.6 0.0016 P8 Cb GC GGGGCTCACA (10) 1.6 0.0016 Cb medulloblastoma CACAACAAAA (7) 11.6 0.0116 P8 GC+1d culture AGGAAATGAA (9) 2.3 0.0023 P8 GC+1d culture GGGGCTCACA (10) 2.3 0.0023 P8 GC+1d culture TGGTTGTTGG (20) 2.3 0.0023 P8 GC+1d culture CACAACAAAA (7) 1.1 0.0011 P8 GC+1d culture TTTCAGCACT (6) 1.1 0.0011 P8 GC+SHH+1d culture AGGAAATGAA (9) 1.2 0.0012 P8 GC+SHH+1d culture TGGTTGTTGG (20) 1.2 0.0012 3T3 fibroblasts GAAAACACCT (5) 7 0.007 3T3 fibroblasts CTATGTGTTG 3.5 0.0035 3T3 fibroblasts GGTACTGGGA 3.5 0.0035 3T3 fibroblasts TGTGAGAGGA (2) 3.5 0.0035 E15 cortex GGGGCTCACA (10) 54.4 0.0544 E15 cortex CCCAGCCTGA (3) 9.9 0.0099 E15 cortex TGGTTGTTGG (20) 4.9 0.0049 P1 cortex CTATGTGTTG 18.2 0.0182 P1 cortex GGGGCTCACA (10) 13.6 0.0136 P1 cortex GAAAAAGGAA (9) 9.1 0.0091 P1 cortex TGGTTGTTGG (20) 9.1 0.0091 P1 cortex AGGAAATGAA (9) 4.5 0.0045 Hypothalamus GGGGCTCACA (10) 36.2 0.0362 Hypothalamus TGGTTGTTGG (20) 19.9 0.0199 Hypothalamus CACAACAAAA (7) 7.2 0.0072 Hypothalamus AGGAAATGAA (9) 1.8 0.0018 E12.5 retina GGGGCTCACA (10) 35.7 0.0357 E12.5 retina TCACAATGAG (2) 7.5 0.0075 E12.5 retina TGGTTGTTGG (20) 5.6 0.0056 E12.5 retina GAAAACACCT (5) 3.8 0.0038 E12.5 retina GGTACTGGGA 1.9 0.0019 E12.5 retina TGTGAGAGGA (2) 1.9 0.0019 E12.5 retina TTTCAGCACT (6) 1.9 0.0019 E14.5 retina GGGGCTCACA (10) 54.7 0.0547 E14.5 retina TGGTTGTTGG (20) 38.3 0.0383 E14.5 retina TCACAATGAG (2) 27.3 0.0273 E14.5 retina GAAAACACCT (5) 3.6 0.0036 E14.5 retina AGGAAATGAA (9) 1.8 0.0018 E14.5 retina GGTACTGGGA 1.8 0.0018 E16.5 retina GGGGCTCACA (10) 36.2 0.0362 E16.5 retina TGGTTGTTGG (20) 16.3 0.0163 E16.5 retina AGGAAATGAA (9) 1.8 0.0018 E16.5 retina TTTCAGCACT (6) 1.8 0.0018 E18.5 retina GGGGCTCACA (10) 72.8 0.0728 E18.5 retina TCACAATGAG (2) 7.3 0.0073 E18.5 retina TGGTTGTTGG (20) 5.5 0.0055 E18.5 retina TGTGAGAGGA (2) 1.8 0.0018 P0.5 retina GGGGCTCACA (10) 37.3 0.0373 P0.5 retina TCACAATGAG (2) 19.6 0.0196 P0.5 retina CTAATGCTCA 3.9 0.0039 P0.5 retina AGGAAATGAA (9) 2 0.002 P0.5 retina CTATGTGTTG 2 0.002 P0.5 retina TGTGAGAGGA (2) 2 0.002 P2.5 retina GGGGCTCACA (10) 65.1 0.0651 P2.5 retina TCACAATGAG (2) 65.1 0.0651 P2.5 retina TGGTTGTTGG (20) 7 0.007 P2.5 retina CTATGTGTTG 3.5 0.0035 P2.5 retina AGGAAATGAA (9) 1.8 0.0018 P2.5 retina GAAAACACCT (5) 1.8 0.0018 P2.5 retina TGTGAGAGGA (2) 1.8 0.0018 P4.5 retina TCACAATGAG (2) 35.7 0.0357 P4.5 retina GGGGCTCACA (10) 27.7 0.0277 P4.5 retina TGGTTGTTGG (20) 11.9 0.0119 P4.5 retina AGGAAATGAA (9) 5.9 0.0059 P4.5 retina GAAAACACCT (5) 5.9 0.0059 P4.5 retina GGTACTGGGA 4 0.004 P4.5 retina CTATGTGTTG 2 0.002 P6.5 retina TCACAATGAG (2) 56.7 0.0567 P6.5 retina GGGGCTCACA (10) 43.4 0.0434 P6.5 retina GAAAACACCT (5) 8.3 0.0083 P6.5 retina CTATGTGTTG 6.7 0.0067 P6.5 retina TGGTTGTTGG (20) 5 0.005 P6.5 retina CTAATGCTCA 3.3 0.0033 P6.5 retina AAATAAGAAA (3) 1.7 0.0017 P6.5 retina CACAACAAAA (7) 1.7 0.0017 P10.5 crx- retina GGGGCTCACA (10) 24.2 0.0242 P10.5 crx- retina TCACAATGAG (2) 9.3 0.0093 P10.5 crx- retina TGGTTGTTGG (20) 7.4 0.0074 P10.5 crx- retina CTAATGCTCA 3.7 0.0037 P10.5 crx- retina CCCAGCCTGA (3) 1.9 0.0019 P10.5 crx+ retina GGGGCTCACA (10) 17.3 0.0173 P10.5 crx+ retina TCACAATGAG (2) 9.6 0.0096 P10.5 crx+ retina GAAAACACCT (5) 3.8 0.0038 P10.5 crx+ retina TGGTTGTTGG (20) 3.8 0.0038 P10.5 crx+ retina CTAATGCTCA 1.9 0.0019 P10.5 crx+ retina CTATGTGTTG 1.9 0.0019 Adult retinal GGGGCTCACA (10) 31.5 0.0315 Adult retinal TGGTTGTTGG (20) 7.4 0.0074 Adult retinal CACAACAAAA (7) 3.7 0.0037 Adult retinal AAATAAGAAA (3) 1.9 0.0019 Adult retinal AGGAAATGAA (9) 1.9 0.0019 ONL GGGGCTCACA (10) 38.3 0.0383 ONL TGGTTGTTGG (20) 11.5 0.0115 ONL AGGAAATGAA (9) 3.8 0.0038 ONL GGTACTGGGA 3.8 0.0038 ONL AAATAAGAAA (3) 1.9 0.0019