Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.27503
5730408K05Rik
RIKEN cDNA 5730408K05 gene
19
67531
Mm.27503
1810009A15Rik
RIKEN cDNA 1810009A15 gene
19
19 A
66276
Mm.27503
2610018C13Rik
RIKEN cDNA 2610018C13 gene
19
72405
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
Total 12 In Situ Hybridization Images
Images -- Click to Enlarge
SAGE Tags
Total 49 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
CCTTTAATCC (
355
)
52.2
0.0522
P8 Cb GC
GAAGTGGAAG
(
8
)
1.6
0.0016
Cb medulloblastoma
CCTTTAATCC (
355
)
41.6
0.0416
P8 GC+1d culture
CCTTTAATCC (
355
)
32
0.032
P8 GC+SHH+1d culture
CCTTTAATCC (
355
)
25.8
0.0258
P8 GC+SHH+1d culture
GAAGTGGAAG
(
8
)
1.2
0.0012
3T3 fibroblasts
CCTTTAATCC (
355
)
70.1
0.0701
3T3 fibroblasts
GAAGTGGAAG
(
8
)
21
0.021
E15 cortex
CCTTTAATCC (
355
)
54.4
0.0544
P1 cortex
CCTTTAATCC (
355
)
154.5
0.1545
P1 cortex
CTGGCAAAAT
(
3
)
9.1
0.0091
Hypothalamus
CCTTTAATCC (
355
)
19.9
0.0199
Hypothalamus
GAAGTGGAAG
(
8
)
1.8
0.0018
E12.5 retina
CCTTTAATCC (
355
)
75.1
0.0751
E12.5 retina
GAAGTGGAAG
(
8
)
3.8
0.0038
E14.5 retina
CCTTTAATCC (
355
)
120.3
0.1203
E14.5 retina
GCTGCTTTTT
(
5
)
1.8
0.0018
E16.5 retina
CCTTTAATCC (
355
)
68.8
0.0688
E16.5 retina
GAAGTGGGAA
(
4
)
1.8
0.0018
E18.5 retina
CCTTTAATCC (
355
)
23.6
0.0236
E18.5 retina
GAAGTGGAAG
(
8
)
3.6
0.0036
E18.5 retina
CTGGCAAAAT
(
3
)
1.8
0.0018
P0.5 retina
CCTTTAATCC (
355
)
72.6
0.0726
P0.5 retina
GAAGTGGAAG
(
8
)
5.9
0.0059
P0.5 retina
GCTGCTTTTT
(
5
)
2
0.002
P2.5 retina
CCTTTAATCC (
355
)
70.4
0.0704
P2.5 retina
CTGGCAAAAT
(
3
)
1.8
0.0018
P2.5 retina
GAAGTGGAAG
(
8
)
1.8
0.0018
P4.5 retina
CCTTTAATCC (
355
)
43.6
0.0436
P6.5 retina
CCTTTAATCC (
355
)
70
0.07
P6.5 retina
GAAGTGGAAG
(
8
)
11.7
0.0117
P6.5 retina
CTGGCAAAAT
(
3
)
1.7
0.0017
P10.5 crx- retina
CCTTTAATCC (
355
)
63.2
0.0632
P10.5 crx- retina
GAAGTGGAAG
(
8
)
14.9
0.0149
P10.5 crx- retina
AGGAGTTGCT
(
4
)
1.9
0.0019
P10.5 crx+ retina
CCTTTAATCC (
355
)
38.4
0.0384
P10.5 crx+ retina
GAAGTGGAAG
(
8
)
9.6
0.0096
P10.5 crx+ retina
CTGGCAAAAT
(
3
)
5.8
0.0058
P10.5 crx+ retina
GCTGCTTTTT
(
5
)
3.8
0.0038
P10.5 crx+ retina
GAAGTGGGAA
(
4
)
1.9
0.0019
Adult retinal
CCTTTAATCC (
355
)
129.6
0.1296
Adult retinal
GAAGTGGAAG
(
8
)
37
0.037
Adult retinal
CTGGCAAAAT
(
3
)
3.7
0.0037
Adult retinal
AGGAGTTGCT
(
4
)
1.9
0.0019
Adult retinal
GCTGCTTTTT
(
5
)
1.9
0.0019
ONL
CCTTTAATCC (
355
)
84.3
0.0843
ONL
GAAGTGGAAG
(
8
)
44.1
0.0441
ONL
CTGGCAAAAT
(
3
)
5.7
0.0057
ONL
AGGAGTTGCT
(
4
)
1.9
0.0019
