Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.275413
Tdrd7
tudor domain containing 7
4
4 B1
100121
Gene Ontology
nucleic acid binding
Human Homolog
TDRD7[tudor domain containing 7]
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
Total 5 In Situ Hybridization Images
Images -- Click to Enlarge
SAGE Tags
Total 87 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
CCTTTAATCC (
355
)
52.2
0.0522
P8 Cb GC
TAATAAAAAT (
10
)
32.6
0.0326
P8 Cb GC
GCTCTGACTG
(
8
)
1.6
0.0016
P8 Cb GC
GTTCTGACTG
(
7
)
1.6
0.0016
P8 Cb GC
TACACAAATG
(
5
)
1.6
0.0016
Cb medulloblastoma
CCTTTAATCC (
355
)
41.6
0.0416
Cb medulloblastoma
TAATAAAAAT (
10
)
9.2
0.0092
P8 GC+1d culture
CCTTTAATCC (
355
)
32
0.032
P8 GC+1d culture
TAATAAAAAT (
10
)
30.8
0.0308
P8 GC+1d culture
GCTCTGACTG
(
8
)
4.6
0.0046
P8 GC+1d culture
GTTCTGACTG
(
7
)
2.3
0.0023
P8 GC+1d culture
TACACAAATG
(
5
)
2.3
0.0023
P8 GC+1d culture
ATATTTGGTT (
2
)
1.1
0.0011
P8 GC+1d culture
CAATACTAAC (
2
)
1.1
0.0011
P8 GC+1d culture
TGGGAAGATC (
6
)
1.1
0.0011
P8 GC+SHH+1d culture
TAATAAAAAT (
10
)
60.9
0.0609
P8 GC+SHH+1d culture
CCTTTAATCC (
355
)
25.8
0.0258
P8 GC+SHH+1d culture
GCTCTGACTG
(
8
)
5.9
0.0059
P8 GC+SHH+1d culture
GTTCTGACTG
(
7
)
3.5
0.0035
P8 GC+SHH+1d culture
TAGTTAAAAA (
3
)
2.3
0.0023
P8 GC+SHH+1d culture
ATATTTGGTT (
2
)
1.2
0.0012
P8 GC+SHH+1d culture
TACACAAATG
(
5
)
1.2
0.0012
3T3 fibroblasts
CCTTTAATCC (
355
)
70.1
0.0701
E15 cortex
CCTTTAATCC (
355
)
54.4
0.0544
E15 cortex
TAATAAAAAT (
10
)
4.9
0.0049
P1 cortex
CCTTTAATCC (
355
)
154.5
0.1545
P1 cortex
TAATAAAAAT (
10
)
4.5
0.0045
Hypothalamus
CCTTTAATCC (
355
)
19.9
0.0199
Hypothalamus
TAATAAAAAT (
10
)
7.2
0.0072
Hypothalamus
TACACAAATG
(
5
)
3.6
0.0036
Hypothalamus
TGGGAAGATC (
6
)
3.6
0.0036
Hypothalamus
GTTCTGACTG
(
7
)
1.8
0.0018
E12.5 retina
CCTTTAATCC (
355
)
75.1
0.0751
E12.5 retina
TAATAAAAAT (
10
)
18.8
0.0188
E12.5 retina
TACACAAATG
(
5
)
1.9
0.0019
E14.5 retina
CCTTTAATCC (
355
)
120.3
0.1203
E14.5 retina
TAATAAAAAT (
10
)
72.9
0.0729
E14.5 retina
GTTCTGACTG
(
7
)
3.6
0.0036
E14.5 retina
ATATTTGGTT (
2
)
1.8
0.0018
E14.5 retina
GCTCTGACTG
(
8
)
1.8
0.0018
E14.5 retina
TACACAAATG
(
5
)
1.8
0.0018
E14.5 retina
TAGTTAAAAA (
3
)
1.8
0.0018
E16.5 retina
CCTTTAATCC (
355
)
68.8
0.0688
E16.5 retina
TAATAAAAAT (
10
)
48.9
0.0489
E16.5 retina
TACACAAATG
(
5
)
7.2
0.0072
E16.5 retina
CAATACTAAC (
2
)
1.8
0.0018
E16.5 retina
GCTCTGACTG
(
8
)
1.8
0.0018
E18.5 retina
TAATAAAAAT (
10
)
70.9
0.0709
E18.5 retina
CCTTTAATCC (
355
)
23.6
0.0236
E18.5 retina
TACACAAATG
(
5
)
3.6
0.0036
E18.5 retina
ATATTTGGTT (
2
)
1.8
0.0018
E18.5 retina
GCTCTGACTG
(
8
)
1.8
0.0018
P0.5 retina
CCTTTAATCC (
355
)
72.6
0.0726
P0.5 retina
TAATAAAAAT (
10
)
5.9
0.0059
P0.5 retina
TACACAAATG
(
5
)
2
0.002
P2.5 retina
CCTTTAATCC (
355
)
70.4
0.0704
P2.5 retina
TAATAAAAAT (
10
)
49.3
0.0493
P2.5 retina
TAGTTAAAAA (
3
)
1.8
0.0018
P4.5 retina
CCTTTAATCC (
355
)
43.6
0.0436
P4.5 retina
TAATAAAAAT (
10
)
25.8
0.0258
P4.5 retina
GCTCTGACTG
(
8
)
4
0.004
P4.5 retina
TAGTTAAAAA (
3
)
2
0.002
P6.5 retina
CCTTTAATCC (
355
)
70
0.07
P6.5 retina
TAATAAAAAT (
10
)
41.7
0.0417
P6.5 retina
GCTCTGACTG
(
8
)
8.3
0.0083
P6.5 retina
TAGTTAAAAA (
3
)
6.7
0.0067
P6.5 retina
GTTCTGACTG
(
7
)
1.7
0.0017
P6.5 retina
TACACAAATG
(
5
)
1.7
0.0017
P10.5 crx- retina
CCTTTAATCC (
355
)
63.2
0.0632
P10.5 crx- retina
GCTCTGACTG
(
8
)
29.7
0.0297
P10.5 crx- retina
TAATAAAAAT (
10
)
5.6
0.0056
P10.5 crx- retina
TACACAAATG
(
5
)
3.7
0.0037
P10.5 crx- retina
TAGTTAAAAA (
3
)
3.7
0.0037
P10.5 crx- retina
CAATACTAAC (
2
)
1.9
0.0019
P10.5 crx- retina
GTTCTGACTG
(
7
)
1.9
0.0019
P10.5 crx+ retina
CCTTTAATCC (
355
)
38.4
0.0384
P10.5 crx+ retina
TAATAAAAAT (
10
)
28.8
0.0288
P10.5 crx+ retina
GCTCTGACTG
(
8
)
17.3
0.0173
P10.5 crx+ retina
TACACAAATG
(
5
)
3.8
0.0038
Adult retinal
CCTTTAATCC (
355
)
129.6
0.1296
Adult retinal
GCTCTGACTG
(
8
)
14.8
0.0148
Adult retinal
TAATAAAAAT (
10
)
14.8
0.0148
Adult retinal
CAATACTAAC (
2
)
1.9
0.0019
Adult retinal
TAGTTAAAAA (
3
)
1.9
0.0019
ONL
CCTTTAATCC (
355
)
84.3
0.0843
ONL
TAATAAAAAT (
10
)
59.4
0.0594
ONL
GCTCTGACTG
(
8
)
36.4
0.0364
