Mouse Retina SAGE Library

[Home]    [Libraries]    [Images]

---

Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

---

UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.275555	Cnn3	calponin 3, acidic	3		71994
Gene Ontology	actin binding | calmodulin binding | smooth muscle contraction
Human Homolog	CNN3[calponin 3, acidic]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 133 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CAGGTTTGGG (6) 17.9 0.0179 P8 Cb GC ATCAGTGTGC 13.1 0.0131 P8 Cb GC ATTTAATGAA (3) 3.3 0.0033 P8 Cb GC ACTTTATTTA (6) 1.6 0.0016 P8 Cb GC ACTTTATTTT (7) 1.6 0.0016 P8 Cb GC GAAAGGGCGG (4) 1.6 0.0016 P8 Cb GC GAGGAGGAGG (35) 1.6 0.0016 P8 Cb GC TAATATTGAA (5) 1.6 0.0016 Cb medulloblastoma ATCAGTGTGC 9.2 0.0092 Cb medulloblastoma ACTTTATTTA (6) 4.6 0.0046 Cb medulloblastoma ATCAGTGTGA (3) 4.6 0.0046 Cb medulloblastoma ACTTTATTTT (7) 2.3 0.0023 Cb medulloblastoma ATCAGTGAAA 2.3 0.0023 Cb medulloblastoma ATTTAATGAA (3) 2.3 0.0023 Cb medulloblastoma GAAAGGGCGG (4) 2.3 0.0023 P8 GC+1d culture CAGGTTTGGG (6) 24 0.024 P8 GC+1d culture ATCAGTGTGC 6.8 0.0068 P8 GC+1d culture GAAAGGGCGG (4) 6.8 0.0068 P8 GC+1d culture TAATATTGAA (5) 3.4 0.0034 P8 GC+1d culture ACTTTATTTT (7) 2.3 0.0023 P8 GC+1d culture ACTTTATTTA (6) 1.1 0.0011 P8 GC+1d culture ATCAGTGTGA (3) 1.1 0.0011 P8 GC+1d culture TAATCAGAAA (3) 1.1 0.0011 P8 GC+SHH+1d culture CAGGTTTGGG (6) 36.3 0.0363 P8 GC+SHH+1d culture ATCAGTGTGC 10.5 0.0105 P8 GC+SHH+1d culture ATCAGTGTGA (3) 4.7 0.0047 P8 GC+SHH+1d culture GAAAGGGCGG (4) 3.5 0.0035 P8 GC+SHH+1d culture TAATCAGAAA (3) 2.3 0.0023 P8 GC+SHH+1d culture ACTTTATTTA (6) 1.2 0.0012 P8 GC+SHH+1d culture ATTTAATGAA (3) 1.2 0.0012 P8 GC+SHH+1d culture GAGGAGGAGG (35) 1.2 0.0012 P8 GC+SHH+1d culture GCGAGTACCC 1.2 0.0012 P8 GC+SHH+1d culture TAATATTGAA (5) 1.2 0.0012 3T3 fibroblasts CAGGTTTGGG (6) 21 0.021 3T3 fibroblasts GAGGAGGAGG (35) 3.5 0.0035 E15 cortex CAGGTTTGGG (6) 19.8 0.0198 E15 cortex ATCAGTGTGC 4.9 0.0049 E15 cortex GAAAGGGCGG (4) 4.9 0.0049 E15 cortex GAGGAGGAGG (35) 4.9 0.0049 E15 cortex TAATCAGAAA (3) 4.9 0.0049 P1 cortex CAGGTTTGGG (6) 4.5 0.0045 P1 cortex GAGGAGGAGG (35) 4.5 0.0045 P1 cortex TAATATTGAA (5) 4.5 0.0045 P1 cortex TAATCAGAAA (3) 4.5 0.0045 Hypothalamus GAGGAGGAGG (35) 7.2 0.0072 Hypothalamus ACTTTATTTA (6) 3.6 0.0036 Hypothalamus TAATATTGAA (5) 3.6 0.0036 Hypothalamus ATCAGTGTGA (3) 1.8 0.0018 Hypothalamus ATCAGTGTGC 1.8 0.0018 Hypothalamus ATTTAATGAA (3) 1.8 0.0018 Hypothalamus GAAAGGGCGG (4) 1.8 0.0018 E12.5 retina CAGGTTTGGG (6) 30 0.03 E12.5 retina ATCAGTGTGC 22.5 0.0225 E12.5 retina ACTTTATTTT (7) 3.8 0.0038 E12.5 retina ATCAGTGAAA 1.9 0.0019 E12.5 retina GAGGAGGAGG (35) 1.9 0.0019 E14.5 retina CAGGTTTGGG (6) 27.3 0.0273 E14.5 retina ATCAGTGTGC 14.6 0.0146 E14.5 retina ATCAGTGTGA (3) 7.3 0.0073 E14.5 retina TAATATTGAA (5) 5.5 0.0055 E14.5 retina ATTTAATGAA (3) 3.6 0.0036 E14.5 retina ACTTTATTTA (6) 1.8 0.0018 E14.5 retina GAAAGGGCGG (4) 1.8 0.0018 E14.5 retina GCGAGTACCC 1.8 0.0018 E14.5 retina TGTACTCATT (2) 1.8 0.0018 E16.5 retina CAGGTTTGGG (6) 30.8 0.0308 E16.5 retina GAAAGGGCGG (4) 10.9 0.0109 E16.5 retina ATCAGTGTGC 7.2 0.0072 E16.5 retina ATCAGTGTGA (3) 5.4 0.0054 E16.5 retina TAATATTGAA (5) 3.6 0.0036 E16.5 retina ACTTTATTTA (6) 1.8 0.0018 E16.5 retina ATCAGTGAAA 1.8 0.0018 E16.5 retina ATTTAATGAA (3) 1.8 0.0018 E16.5 retina GCGAGTACCC 1.8 0.0018 E16.5 retina GGCACAACTT 1.8 0.0018 E16.5 retina TGTACTCATT (2) 1.8 0.0018 E18.5 retina ATCAGTGTGC 29.1 0.0291 E18.5 retina CAGGTTTGGG (6) 23.6 0.0236 E18.5 retina ACTTTATTTA (6) 5.5 0.0055 E18.5 retina TAATCAGAAA (3) 5.5 0.0055 E18.5 retina ATCAGTGAAA 3.6 0.0036 E18.5 retina ATCAGTGTGA (3) 3.6 0.0036 E18.5 retina TAATATTGAA (5) 3.6 0.0036 P0.5 retina CAGGTTTGGG (6) 29.4 0.0294 P0.5 retina ATCAGTGTGC 9.8 0.0098 P0.5 retina GAAAGGGCGG (4) 7.9 0.0079 P0.5 retina ATCAGTGTGA (3) 5.9 0.0059 P0.5 retina ATCAGTGAAA 3.9 0.0039 P0.5 retina ACTTTATTTT (7) 2 0.002 P0.5 retina ATTTAATGAA (3) 2 0.002 P0.5 retina GGCACAACTT 2 0.002 P0.5 retina TAATATTGAA (5) 2 0.002 P2.5 retina CAGGTTTGGG (6) 14.1 0.0141 P2.5 retina ATCAGTGTGC 10.6 0.0106 P2.5 retina ATCAGTGTGA (3) 7 0.007 P2.5 retina GAGGAGGAGG (35) 1.8 0.0018 P2.5 retina TAATCAGAAA (3) 1.8 0.0018 P4.5 retina CAGGTTTGGG (6) 19.8 0.0198 P4.5 retina TAATCAGAAA (3) 5.9 0.0059 P4.5 retina ATCAGTGTGA (3) 2 0.002 P4.5 retina ATCAGTGTGC 2 0.002 P4.5 retina GAGGAGGAGG (35) 2 0.002 P4.5 retina TAATATTGAA (5) 2 0.002 P4.5 retina TGTACTCATT (2) 2 0.002 P6.5 retina CAGGTTTGGG (6) 5 0.005 P6.5 retina ATCAGTGTGA (3) 3.3 0.0033 P6.5 retina ATCAGTGTGC 3.3 0.0033 P6.5 retina ACTTTATTTA (6) 1.7 0.0017 P6.5 retina ATCAGTGAAA 1.7 0.0017 P6.5 retina GAAAGGGCGG (4) 1.7 0.0017 P10.5 crx- retina ATCAGTGTGC 7.4 0.0074 P10.5 crx- retina ACTTTATTTT (7) 3.7 0.0037 P10.5 crx- retina ACTTTATTTA (6) 1.9 0.0019 P10.5 crx- retina ATTTAATGAA (3) 1.9 0.0019 P10.5 crx- retina CAGGTTTGGG (6) 1.9 0.0019 P10.5 crx- retina GAGGAGGAGG (35) 1.9 0.0019 P10.5 crx- retina TAATATTGAA (5) 1.9 0.0019 P10.5 crx- retina TAATCAGAAA (3) 1.9 0.0019 P10.5 crx+ retina CAGGTTTGGG (6) 17.3 0.0173 P10.5 crx+ retina ATCAGTGTGC 9.6 0.0096 P10.5 crx+ retina ATCAGTGTGA (3) 3.8 0.0038 P10.5 crx+ retina ATCAGTGAAA 1.9 0.0019 P10.5 crx+ retina GAAAGGGCGG (4) 1.9 0.0019 P10.5 crx+ retina GGCACAACTT 1.9 0.0019 P10.5 crx+ retina TAATATTGAA (5) 1.9 0.0019 P10.5 crx+ retina TAATCAGAAA (3) 1.9 0.0019 Adult retinal ATCAGTGTGC 5.6 0.0056 Adult retinal CAGGTTTGGG (6) 3.7 0.0037 Adult retinal GAGGAGGAGG (35) 3.7 0.0037 Adult retinal GGCACAACTT 1.9 0.0019 ONL ACTTTATTTT (7) 1.9 0.0019 ONL GAGGAGGAGG (35) 1.9 0.0019 ONL TAATATTGAA (5) 1.9 0.0019