Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.27660	Rbm12	RNA binding motif protein 12	2		75710
Mm.27660	Cpne1	copine I	2		266692
Gene Ontology	biological_process unknown | cellular_component unknown | phosphatidylserine binding
Human Homolog	CPNE1[copine I]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 86 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC ATCTCCTTGG (3) 8.2 0.0082 P8 Cb GC GAGGTGGAAG (6) 8.2 0.0082 P8 Cb GC TTTTTATATT (4) 3.3 0.0033 P8 Cb GC CCAGTGATGG (4) 1.6 0.0016 P8 Cb GC TGTAAGTTAT (3) 1.6 0.0016 Cb medulloblastoma ATCTCCTTGG (3) 11.6 0.0116 Cb medulloblastoma TCAAGAACAA (5) 4.6 0.0046 Cb medulloblastoma GTGGCCTTTG (8) 2.3 0.0023 P8 GC+1d culture GAGGTGGAAG (6) 9.1 0.0091 P8 GC+1d culture ATCTCCTTGG (3) 5.7 0.0057 P8 GC+1d culture CCAGTGATGG (4) 3.4 0.0034 P8 GC+1d culture TGAAATGTGA (7) 3.4 0.0034 P8 GC+1d culture TGTAAGTTAT (3) 2.3 0.0023 P8 GC+1d culture TTTTTATATT (4) 2.3 0.0023 P8 GC+1d culture TTCATTTGGG (7) 1.1 0.0011 P8 GC+SHH+1d culture GAGGTGGAAG (6) 11.7 0.0117 P8 GC+SHH+1d culture TCAAGAACAA (5) 4.7 0.0047 P8 GC+SHH+1d culture TTTTTATATT (4) 3.5 0.0035 P8 GC+SHH+1d culture CCAGTGATGG (4) 2.3 0.0023 P8 GC+SHH+1d culture ATCTCCTTGG (3) 1.2 0.0012 P8 GC+SHH+1d culture CACACACAAC (4) 1.2 0.0012 P8 GC+SHH+1d culture GTGGCCTTTG (8) 1.2 0.0012 3T3 fibroblasts GAGGTGGAAG (6) 3.5 0.0035 E15 cortex GAGGTGGAAG (6) 9.9 0.0099 P1 cortex TTCATTTGGG (7) 4.5 0.0045 P1 cortex TTTTTATATT (4) 4.5 0.0045 Hypothalamus GAGGTGGAAG (6) 3.6 0.0036 Hypothalamus CCAGTGATGG (4) 1.8 0.0018 Hypothalamus GTGGCCTTTG (8) 1.8 0.0018 Hypothalamus TGAAATGTGA (7) 1.8 0.0018 E12.5 retina GAGGTGGAAG (6) 7.5 0.0075 E12.5 retina ATCTCCTTGG (3) 3.8 0.0038 E12.5 retina TGAAATGTGA (7) 1.9 0.0019 E12.5 retina TTCATTTGGG (7) 1.9 0.0019 E12.5 retina TTTTTATATT (4) 1.9 0.0019 E14.5 retina ATCTCCTTGG (3) 9.1 0.0091 E14.5 retina TCAAGAACAA (5) 5.5 0.0055 E14.5 retina CCAGTGATGG (4) 1.8 0.0018 E14.5 retina TTTTTATATT (4) 1.8 0.0018 E16.5 retina ATCTCCTTGG (3) 14.5 0.0145 E16.5 retina TTTTTATATT (4) 10.9 0.0109 E16.5 retina GAGGTGGAAG (6) 3.6 0.0036 E16.5 retina TCAAGAACAA (5) 1.8 0.0018 E16.5 retina TTCATTTGGG (7) 1.8 0.0018 E18.5 retina GAGGTGGAAG (6) 9.1 0.0091 E18.5 retina ATCTCCTTGG (3) 5.5 0.0055 E18.5 retina TCAAGAACAA (5) 5.5 0.0055 E18.5 retina TTTTTATATT (4) 5.5 0.0055 E18.5 retina CACACACAAC (4) 1.8 0.0018 E18.5 retina CCAGTGATGG (4) 1.8 0.0018 P0.5 retina GAGGTGGAAG (6) 9.8 0.0098 P0.5 retina ATCTCCTTGG (3) 7.9 0.0079 P0.5 retina CCAGTGATGG (4) 5.9 0.0059 P0.5 retina TCAAGAACAA (5) 3.9 0.0039 P0.5 retina TGTAAGTTAT (3) 2 0.002 P2.5 retina GAGGTGGAAG (6) 12.3 0.0123 P2.5 retina ATCTCCTTGG (3) 8.8 0.0088 P2.5 retina TGTAAGTTAT (3) 1.8 0.0018 P2.5 retina TTTTTATATT (4) 1.8 0.0018 P4.5 retina ATCTCCTTGG (3) 9.9 0.0099 P4.5 retina CCAGTGATGG (4) 5.9 0.0059 P4.5 retina GAGGTGGAAG (6) 5.9 0.0059 P4.5 retina TTCATTTGGG (7) 2 0.002 P4.5 retina TTTTTATATT (4) 2 0.002 P6.5 retina ATCTCCTTGG (3) 8.3 0.0083 P6.5 retina CCAGTGATGG (4) 5 0.005 P6.5 retina GAGGTGGAAG (6) 3.3 0.0033 P6.5 retina TTCATTTGGG (7) 3.3 0.0033 P6.5 retina GTGGCCTTTG (8) 1.7 0.0017 P6.5 retina TGAAATGTGA (7) 1.7 0.0017 P6.5 retina TTTTTATATT (4) 1.7 0.0017 P10.5 crx- retina ATCTCCTTGG (3) 11.1 0.0111 P10.5 crx- retina TCAAGAACAA (5) 3.7 0.0037 P10.5 crx- retina TTCATTTGGG (7) 1.9 0.0019 P10.5 crx+ retina ATCTCCTTGG (3) 13.5 0.0135 P10.5 crx+ retina CACACACAAC (4) 1.9 0.0019 Adult retinal ATCTCCTTGG (3) 14.8 0.0148 Adult retinal GAGGTGGAAG (6) 3.7 0.0037 Adult retinal TTTTTATATT (4) 3.7 0.0037 Adult retinal GTGGCCTTTG (8) 1.9 0.0019 ONL ATCTCCTTGG (3) 17.2 0.0172 ONL CACACACAAC (4) 3.8 0.0038 ONL TTTTTATATT (4) 3.8 0.0038 ONL TCAAGAACAA (5) 1.9 0.0019 ONL TGTAAGTTAT (3) 1.9 0.0019 ONL TTCATTTGGG (7) 1.9 0.0019