| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | ACTGATATTC (2) ATGGCAATTT (2) CCTTCCTTGC TAAGACAGGC
| 14.7 | 0.0147 |
| Cb medulloblastoma | ATGGCAATTT (2) TAAGACAGGC
| 6.9 | 0.0069 |
| P8 GC+1d culture | ACTGATATTC (2) ATGGCAATTT (2) CTTCTAAGCA (2)
| 10.2 | 0.0102 |
| P8 GC+SHH+1d culture | AGTGGCAAGT ATGGCAATTT (2)
| 10.6 | 0.0106 |
| 3T3 fibroblasts | ATGGCAATTT (2)
| 3.5 | 0.0035 |
| E15 cortex | ATGGCAATTT (2)
| 19.8 | 0.0198 |
| Hypothalamus | AGTGGCAAGT ATGGCAATTT (2)
| 9 | 0.009 |
| E12.5 retina | ATGGCAATTT (2) CCTTCCTTGC
| 16.9 | 0.0169 |
| E14.5 retina | ATGGCAATTT (2)
| 10.9 | 0.0109 |
| E16.5 retina | ATGGCAATTT (2) CTTCTAAGCA (2)
| 16.3 | 0.0163 |
| E18.5 retina | ATGGCAATTT (2)
| 5.5 | 0.0055 |
| P0.5 retina | ACTGATATTC (2) ATGGCAATTT (2) CTTCTAAGCA (2)
| 7.9 | 0.0079 |
| P2.5 retina | ACTGATATTC (2) ATGGCAATTT (2)
| 7.1 | 0.0071 |
| P4.5 retina | ATGGCAATTT (2)
| 5.9 | 0.0059 |
| P6.5 retina | ACTGATATTC (2) CTTCTAAGCA (2)
| 3.4 | 0.0034 |
| P10.5 crx- retina | TAAGACAGGC
| 1.9 | 0.0019 |
| P10.5 crx+ retina | ATGGCAATTT (2) CTTCTAAGCA (2) TAAGACAGGC
| 9.5 | 0.0095 |
| ONL | ATGGCAATTT (2) CTTCTAAGCA (2) TAAGACAGGC
| 7.6 | 0.0076 |