Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.277136	Lig3	ligase III, DNA, ATP-dependent	11	11 48.0 cM	16882
Gene Ontology	ATP binding | DNA binding | DNA ligase (ATP) activity | DNA recombination | DNA repair | DNA replication | intracellular | ligase activity | nucleus
Human Homolog	LIG3[ligase III, DNA, ATP-dependent]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 86 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TAAAAAAAAA (196) 47.3 0.0473 P8 Cb GC TTAAAAAAAA (80) 13.1 0.0131 P8 Cb GC TCTGCCTGCA (8) 3.3 0.0033 P8 Cb GC AAGAAGTCAC (7) 1.6 0.0016 P8 Cb GC GATGTAAATG (2) 1.6 0.0016 Cb medulloblastoma TAAAAAAAAA (196) 106.4 0.1064 Cb medulloblastoma TTAAAAAAAA (80) 53.2 0.0532 Cb medulloblastoma TCTGCCTGCA (8) 27.7 0.0277 Cb medulloblastoma TCAAACAACT (2) 2.3 0.0023 P8 GC+1d culture TAAAAAAAAA (196) 66.2 0.0662 P8 GC+1d culture TTAAAAAAAA (80) 28.5 0.0285 P8 GC+1d culture TCTGCCTGCA (8) 4.6 0.0046 P8 GC+SHH+1d culture TAAAAAAAAA (196) 93.7 0.0937 P8 GC+SHH+1d culture TTAAAAAAAA (80) 34 0.034 P8 GC+SHH+1d culture TCTGCCTGCA (8) 8.2 0.0082 P8 GC+SHH+1d culture GTCTCTTCTG (4) 2.3 0.0023 P8 GC+SHH+1d culture TGCATCTTAA 2.3 0.0023 P8 GC+SHH+1d culture GATGTAAATG (2) 1.2 0.0012 3T3 fibroblasts TAAAAAAAAA (196) 7 0.007 E15 cortex TAAAAAAAAA (196) 9.9 0.0099 E15 cortex TTAAAAAAAA (80) 4.9 0.0049 P1 cortex TAAAAAAAAA (196) 50 0.05 P1 cortex TTAAAAAAAA (80) 13.6 0.0136 Hypothalamus TAAAAAAAAA (196) 32.6 0.0326 Hypothalamus TTAAAAAAAA (80) 19.9 0.0199 Hypothalamus TCTGCCTGCA (8) 10.9 0.0109 E12.5 retina TAAAAAAAAA (196) 24.4 0.0244 E12.5 retina TTAAAAAAAA (80) 11.3 0.0113 E12.5 retina AAGACTCACA (6) 1.9 0.0019 E12.5 retina TCAAACAACT (2) 1.9 0.0019 E12.5 retina TCTGCCTGCA (8) 1.9 0.0019 E12.5 retina TGGCCTGATG (5) 1.9 0.0019 E14.5 retina TAAAAAAAAA (196) 41.9 0.0419 E14.5 retina TTAAAAAAAA (80) 16.4 0.0164 E14.5 retina TCTGCCTGCA (8) 7.3 0.0073 E14.5 retina GTCTCTTCTG (4) 3.6 0.0036 E14.5 retina AAGAAGTCAC (7) 1.8 0.0018 E14.5 retina AAGACTCACA (6) 1.8 0.0018 E16.5 retina TAAAAAAAAA (196) 23.5 0.0235 E16.5 retina TTAAAAAAAA (80) 16.3 0.0163 E16.5 retina TCTGCCTGCA (8) 3.6 0.0036 E16.5 retina AAGAAGTCAC (7) 1.8 0.0018 E16.5 retina TCAAACAACT (2) 1.8 0.0018 E18.5 retina TAAAAAAAAA (196) 107.3 0.1073 E18.5 retina TTAAAAAAAA (80) 50.9 0.0509 E18.5 retina TGCATCTTAA 3.6 0.0036 E18.5 retina TCAAACAACT (2) 1.8 0.0018 P0.5 retina TAAAAAAAAA (196) 37.3 0.0373 P0.5 retina TTAAAAAAAA (80) 17.7 0.0177 P0.5 retina AAGACTCACA (6) 2 0.002 P0.5 retina TCTGCCTGCA (8) 2 0.002 P2.5 retina TAAAAAAAAA (196) 72.2 0.0722 P2.5 retina TTAAAAAAAA (80) 40.5 0.0405 P2.5 retina TGGCCTGATG (5) 3.5 0.0035 P2.5 retina GATGTAAATG (2) 1.8 0.0018 P2.5 retina TCTGCCTGCA (8) 1.8 0.0018 P4.5 retina TAAAAAAAAA (196) 122.8 0.1228 P4.5 retina TTAAAAAAAA (80) 47.6 0.0476 P4.5 retina TCTGCCTGCA (8) 5.9 0.0059 P4.5 retina AAGACTCACA (6) 2 0.002 P4.5 retina TGCATCTTAA 2 0.002 P4.5 retina TGGCCTGATG (5) 2 0.002 P6.5 retina TAAAAAAAAA (196) 63.4 0.0634 P6.5 retina TTAAAAAAAA (80) 16.7 0.0167 P6.5 retina TCTGCCTGCA (8) 15 0.015 P6.5 retina TCAAACAACT (2) 1.7 0.0017 P10.5 crx- retina TTAAAAAAAA (80) 13 0.013 P10.5 crx- retina TAAAAAAAAA (196) 9.3 0.0093 P10.5 crx- retina TCAAACAACT (2) 1.9 0.0019 P10.5 crx- retina TCTGCCTGCA (8) 1.9 0.0019 P10.5 crx+ retina TAAAAAAAAA (196) 25 0.025 P10.5 crx+ retina TCTGCCTGCA (8) 21.1 0.0211 P10.5 crx+ retina TTAAAAAAAA (80) 5.8 0.0058 P10.5 crx+ retina AAGAAGTCAC (7) 3.8 0.0038 P10.5 crx+ retina AAGACTCACA (6) 3.8 0.0038 Adult retinal TAAAAAAAAA (196) 18.5 0.0185 Adult retinal TCTGCCTGCA (8) 11.1 0.0111 Adult retinal AAGAAGTCAC (7) 7.4 0.0074 Adult retinal TTAAAAAAAA (80) 7.4 0.0074 Adult retinal AAGACTCACA (6) 1.9 0.0019 ONL TAAAAAAAAA (196) 28.7 0.0287 ONL TCTGCCTGCA (8) 9.6 0.0096 ONL AAGAAGTCAC (7) 7.7 0.0077 ONL TCAAACAACT (2) 7.7 0.0077 ONL TTAAAAAAAA (80) 7.7 0.0077 ONL AAGACTCACA (6) 3.8 0.0038