Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.277327	H13	histocompatibility 13	2	2 86.0 cM	14950
Gene Ontology	D-alanyl-D-alanine endopeptidase activity | endoplasmic reticulum | endoplasmic reticulum membrane | hydrolase activity | integral to membrane | peptidase activity
Human Homolog	HM13[histocompatibility (minor) 13]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 152 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CCTTTAATCC (355) 52.2 0.0522 P8 Cb GC GCCGCTAGGC (2) 19.6 0.0196 P8 Cb GC GCAAAAAAAA (50) 14.7 0.0147 P8 Cb GC GCCAAAAAAA (23) 6.5 0.0065 P8 Cb GC AAGACAATAC 3.3 0.0033 P8 Cb GC GCCAGAAAAA (10) 3.3 0.0033 P8 Cb GC AGGACCTGAG (6) 1.6 0.0016 Cb medulloblastoma GCAAAAAAAA (50) 60.1 0.0601 Cb medulloblastoma CCTTTAATCC (355) 41.6 0.0416 Cb medulloblastoma GCCGCTAGGC (2) 16.2 0.0162 Cb medulloblastoma GCCAGAAAAA (10) 13.9 0.0139 Cb medulloblastoma GCCAAAAAAA (23) 9.2 0.0092 Cb medulloblastoma GCCGTTAGGC 2.3 0.0023 Cb medulloblastoma GGATGAGTTT 2.3 0.0023 P8 GC+1d culture CCTTTAATCC (355) 32 0.032 P8 GC+1d culture GCCGCTAGGC (2) 29.7 0.0297 P8 GC+1d culture GCAAAAAAAA (50) 12.6 0.0126 P8 GC+1d culture GCCAAAAAAA (23) 8 0.008 P8 GC+1d culture AAGACAATAC 3.4 0.0034 P8 GC+1d culture GCCAGAAAAA (10) 3.4 0.0034 P8 GC+1d culture TGGCCAGCAT (3) 2.3 0.0023 P8 GC+1d culture AAGACATATA (3) 1.1 0.0011 P8 GC+1d culture AGGACCTGAG (6) 1.1 0.0011 P8 GC+1d culture GCCGTTAGGC 1.1 0.0011 P8 GC+1d culture GGAAAAATTG (3) 1.1 0.0011 P8 GC+1d culture GGATGAGTTT 1.1 0.0011 P8 GC+SHH+1d culture GCAAAAAAAA (50) 29.3 0.0293 P8 GC+SHH+1d culture CCTTTAATCC (355) 25.8 0.0258 P8 GC+SHH+1d culture GCCGCTAGGC (2) 19.9 0.0199 P8 GC+SHH+1d culture GCCAAAAAAA (23) 10.5 0.0105 P8 GC+SHH+1d culture GCCAGAAAAA (10) 8.2 0.0082 P8 GC+SHH+1d culture TGGCCAGCAT (3) 2.3 0.0023 P8 GC+SHH+1d culture AAGACAATAC 1.2 0.0012 P8 GC+SHH+1d culture AAGACATATA (3) 1.2 0.0012 P8 GC+SHH+1d culture AGTCATTTTG 1.2 0.0012 P8 GC+SHH+1d culture GCCGTTAGGC 1.2 0.0012 P8 GC+SHH+1d culture GGAAAAATTG (3) 1.2 0.0012 3T3 fibroblasts CCTTTAATCC (355) 70.1 0.0701 3T3 fibroblasts GCCGCTAGGC (2) 28 0.028 3T3 fibroblasts GCGCTGCTGC 7 0.007 3T3 fibroblasts GCAAAAAAAA (50) 3.5 0.0035 E15 cortex CCTTTAATCC (355) 54.4 0.0544 E15 cortex GCCGCTAGGC (2) 29.7 0.0297 E15 cortex GGAAAAATTG (3) 14.8 0.0148 E15 cortex GCAAAAAAAA (50) 9.9 0.0099 E15 cortex GCCAAAAAAA (23) 4.9 0.0049 E15 cortex TGGCCAGCAT (3) 4.9 0.0049 P1 cortex CCTTTAATCC (355) 154.5 0.1545 P1 cortex GCCAAAAAAA (23) 9.1 0.0091 P1 cortex GCCGCTAGGC (2) 9.1 0.0091 P1 cortex AGTCATTTTG 4.5 0.0045 P1 cortex GCAAAAAAAA (50) 4.5 0.0045 Hypothalamus CCTTTAATCC (355) 19.9 0.0199 Hypothalamus GCAAAAAAAA (50) 19.9 0.0199 Hypothalamus GCCAAAAAAA (23) 10.9 0.0109 Hypothalamus GCCAGAAAAA (10) 7.2 0.0072 Hypothalamus GCCGCTAGGC (2) 7.2 0.0072 Hypothalamus AAGACAATAC 3.6 0.0036 Hypothalamus GGAAAAATTG (3) 3.6 0.0036 Hypothalamus AAGACATATA (3) 1.8 0.0018 Hypothalamus AGGAAGGAAG (12) 1.8 0.0018 E12.5 retina CCTTTAATCC (355) 75.1 0.0751 E12.5 retina GCAAAAAAAA (50) 9.4 0.0094 E12.5 retina GCCGCTAGGC (2) 7.5 0.0075 E12.5 retina AAGACAATAC 1.9 0.0019 E12.5 retina GGAAAAATTG (3) 1.9 0.0019 E12.5 retina TGGCCAGCAT (3) 1.9 0.0019 E14.5 retina CCTTTAATCC (355) 120.3 0.1203 E14.5 retina GCCGCTAGGC (2) 18.2 0.0182 E14.5 retina GCAAAAAAAA (50) 12.8 0.0128 E14.5 retina GCCAAAAAAA (23) 9.1 0.0091 E14.5 retina AAGACAATAC 7.3 0.0073 E14.5 retina GGAAAAATTG (3) 5.5 0.0055 E14.5 retina AGGACCTGAG (6) 1.8 0.0018 E14.5 retina GCCAGAAAAA (10) 1.8 0.0018 E16.5 retina CCTTTAATCC (355) 68.8 0.0688 E16.5 retina GCCGCTAGGC (2) 27.2 0.0272 E16.5 retina GCAAAAAAAA (50) 10.9 0.0109 E16.5 retina GCCAAAAAAA (23) 9.1 0.0091 E16.5 retina GGAAAAATTG (3) 7.2 0.0072 E16.5 retina AAGACAATAC 1.8 0.0018 E16.5 retina CTGGGTAAAA (8) 1.8 0.0018 E16.5 retina GGATGAGTTT 1.8 0.0018 E18.5 retina GCCGCTAGGC (2) 29.1 0.0291 E18.5 retina GCAAAAAAAA (50) 25.5 0.0255 E18.5 retina GCCAAAAAAA (23) 25.5 0.0255 E18.5 retina CCTTTAATCC (355) 23.6 0.0236 E18.5 retina GCCAGAAAAA (10) 3.6 0.0036 E18.5 retina AAGACAATAC 1.8 0.0018 E18.5 retina CTGGGTAAAA (8) 1.8 0.0018 P0.5 retina CCTTTAATCC (355) 72.6 0.0726 P0.5 retina GCAAAAAAAA (50) 17.7 0.0177 P0.5 retina GCCGCTAGGC (2) 15.7 0.0157 P0.5 retina AAGACAATAC 3.9 0.0039 P0.5 retina GCCAAAAAAA (23) 2 0.002 P0.5 retina GCCAGAAAAA (10) 2 0.002 P2.5 retina CCTTTAATCC (355) 70.4 0.0704 P2.5 retina GCAAAAAAAA (50) 22.9 0.0229 P2.5 retina GCCGCTAGGC (2) 17.6 0.0176 P2.5 retina GCCAAAAAAA (23) 8.8 0.0088 P2.5 retina GCCAGAAAAA (10) 5.3 0.0053 P2.5 retina AGTCATTTTG 3.5 0.0035 P2.5 retina GGAAAAATTG (3) 3.5 0.0035 P2.5 retina AAGACAATAC 1.8 0.0018 P2.5 retina AAGACATATA (3) 1.8 0.0018 P4.5 retina CCTTTAATCC (355) 43.6 0.0436 P4.5 retina GCAAAAAAAA (50) 25.8 0.0258 P4.5 retina GCCGCTAGGC (2) 23.8 0.0238 P4.5 retina GCCAAAAAAA (23) 11.9 0.0119 P4.5 retina GCCAGAAAAA (10) 5.9 0.0059 P4.5 retina AAGACATATA (3) 4 0.004 P4.5 retina AGGAAGGAAG (12) 2 0.002 P4.5 retina GGAAAAATTG (3) 2 0.002 P6.5 retina CCTTTAATCC (355) 70 0.07 P6.5 retina GCCGCTAGGC (2) 28.3 0.0283 P6.5 retina GCAAAAAAAA (50) 11.7 0.0117 P6.5 retina GCCAAAAAAA (23) 11.7 0.0117 P6.5 retina CTGGGTAAAA (8) 3.3 0.0033 P6.5 retina GCCAGAAAAA (10) 3.3 0.0033 P6.5 retina AAGACAATAC 1.7 0.0017 P6.5 retina AAGACATATA (3) 1.7 0.0017 P6.5 retina GCGCTGCTGC 1.7 0.0017 P6.5 retina GGAAAAATTG (3) 1.7 0.0017 P10.5 crx- retina CCTTTAATCC (355) 63.2 0.0632 P10.5 crx- retina GCCGCTAGGC (2) 14.9 0.0149 P10.5 crx- retina GCCAAAAAAA (23) 9.3 0.0093 P10.5 crx- retina AAGACAATAC 7.4 0.0074 P10.5 crx- retina GCAAAAAAAA (50) 5.6 0.0056 P10.5 crx- retina AAGACATATA (3) 1.9 0.0019 P10.5 crx+ retina CCTTTAATCC (355) 38.4 0.0384 P10.5 crx+ retina GCCGCTAGGC (2) 26.9 0.0269 P10.5 crx+ retina GCCAAAAAAA (23) 17.3 0.0173 P10.5 crx+ retina GCCAGAAAAA (10) 15.4 0.0154 P10.5 crx+ retina AAGACAATAC 7.7 0.0077 P10.5 crx+ retina AGGAAGGAAG (12) 1.9 0.0019 P10.5 crx+ retina GCAAAAAAAA (50) 1.9 0.0019 P10.5 crx+ retina TGGCCAGCAT (3) 1.9 0.0019 Adult retinal CCTTTAATCC (355) 129.6 0.1296 Adult retinal GCCGCTAGGC (2) 13 0.013 Adult retinal GCAAAAAAAA (50) 11.1 0.0111 Adult retinal GCCAAAAAAA (23) 7.4 0.0074 Adult retinal GCCAGAAAAA (10) 5.6 0.0056 Adult retinal GGATGAGTTT 3.7 0.0037 Adult retinal GCGCTGCTGC 1.9 0.0019 Adult retinal GGAAAAATTG (3) 1.9 0.0019 ONL CCTTTAATCC (355) 84.3 0.0843 ONL AGGACCTGAG (6) 5.7 0.0057 ONL GCCGCTAGGC (2) 5.7 0.0057 ONL GCCAAAAAAA (23) 3.8 0.0038 ONL GCCAGAAAAA (10) 3.8 0.0038 ONL AAGACAATAC 1.9 0.0019 ONL GCAAAAAAAA (50) 1.9 0.0019