Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.277406	Stat1	signal transducer and activator of transcription 1	1	1 25.9 cM	20846
Gene Ontology	cytoplasm | DNA binding | intracellular signaling cascade | nucleus | protein binding | regulation of transcription, DNA-dependent | signal transducer activity | signal transduction | transcription factor activity
Human Homolog	STAT1[signal transducer and activator of transcription 1, 91kDa]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 93 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAAAAAAAAA (658) 203.9 0.2039 P8 Cb GC GGTGGAACGG (4) 3.3 0.0033 P8 Cb GC AATAAAAAAG (3) 1.6 0.0016 P8 Cb GC AGATAAAAAA (5) 1.6 0.0016 P8 Cb GC AGTTAAAAAA 1.6 0.0016 Cb medulloblastoma AAAAAAAAAA (658) 797.8 0.7978 Cb medulloblastoma AATAAAAAAG (3) 9.2 0.0092 Cb medulloblastoma AAAAAAAAAT (25) 4.6 0.0046 Cb medulloblastoma AGTTAAAAAA 4.6 0.0046 Cb medulloblastoma GATTGAATAA 4.6 0.0046 Cb medulloblastoma GAAAAGAAAA (12) 2.3 0.0023 Cb medulloblastoma TGATTCCAGA (4) 2.3 0.0023 P8 GC+1d culture AAAAAAAAAA (658) 204.3 0.2043 P8 GC+1d culture AATAAAAAAG (3) 5.7 0.0057 P8 GC+1d culture GGTGGAACGG (4) 5.7 0.0057 P8 GC+1d culture CCAAAATGAA (2) 4.6 0.0046 P8 GC+1d culture AAAAAAAAAT (25) 3.4 0.0034 P8 GC+1d culture AGATAAAAAA (5) 3.4 0.0034 P8 GC+1d culture GATTGAATAA 3.4 0.0034 P8 GC+SHH+1d culture AAAAAAAAAA (658) 278.7 0.2787 P8 GC+SHH+1d culture AAAAAAAAAT (25) 5.9 0.0059 P8 GC+SHH+1d culture GAAAAGAAAA (12) 4.7 0.0047 P8 GC+SHH+1d culture GATTGAATAA 3.5 0.0035 P8 GC+SHH+1d culture GGTGGAACGG (4) 3.5 0.0035 P8 GC+SHH+1d culture AATAAAAAAG (3) 2.3 0.0023 P8 GC+SHH+1d culture AGATAAAAAA (5) 2.3 0.0023 P8 GC+SHH+1d culture AGTTAAAAAA 1.2 0.0012 3T3 fibroblasts AAAAAAAAAA (658) 28 0.028 E15 cortex AAAAAAAAAA (658) 212.8 0.2128 E15 cortex GGTGGAACGG (4) 9.9 0.0099 P1 cortex AAAAAAAAAA (658) 245.4 0.2454 P1 cortex AAAAAAAAAT (25) 9.1 0.0091 P1 cortex AGTTAAAAAA 4.5 0.0045 Hypothalamus AAAAAAAAAA (658) 123.2 0.1232 Hypothalamus AATAAAAAAG (3) 5.4 0.0054 Hypothalamus AGATAAAAAA (5) 1.8 0.0018 Hypothalamus GGTGGAACGG (4) 1.8 0.0018 E12.5 retina AAAAAAAAAA (658) 138.9 0.1389 E12.5 retina GGTGGAACGG (4) 15 0.015 E12.5 retina AATAAAAAAG (3) 1.9 0.0019 E14.5 retina AAAAAAAAAA (658) 94.7 0.0947 E14.5 retina AAAAAAAAAT (25) 5.5 0.0055 E14.5 retina AATAAAAAAG (3) 3.6 0.0036 E14.5 retina AGATAAAAAA (5) 1.8 0.0018 E14.5 retina AGTTAAAAAA 1.8 0.0018 E14.5 retina GGTGGAACGG (4) 1.8 0.0018 E14.5 retina TGATTCCAGA (4) 1.8 0.0018 E16.5 retina AAAAAAAAAA (658) 43.5 0.0435 E16.5 retina GGTGGAACGG (4) 5.4 0.0054 E16.5 retina TGATTCCAGA (4) 5.4 0.0054 E16.5 retina AATAAAAAAG (3) 3.6 0.0036 E16.5 retina AAAAAAAAAT (25) 1.8 0.0018 E18.5 retina AAAAAAAAAA (658) 374.7 0.3747 E18.5 retina AAAAAAAAAT (25) 7.3 0.0073 E18.5 retina GATTGAATAA 1.8 0.0018 E18.5 retina GGTGGAACGG (4) 1.8 0.0018 P0.5 retina AAAAAAAAAA (658) 117.8 0.1178 P0.5 retina AAAAAAAAAT (25) 3.9 0.0039 P0.5 retina GGTGGAACGG (4) 3.9 0.0039 P0.5 retina AATAAAAAAG (3) 2 0.002 P0.5 retina TGATTCCAGA (4) 2 0.002 P2.5 retina AAAAAAAAAA (658) 329.1 0.3291 P2.5 retina AATAAAAAAG (3) 8.8 0.0088 P2.5 retina GGTGGAACGG (4) 8.8 0.0088 P2.5 retina AAAAAAAAAT (25) 3.5 0.0035 P2.5 retina GAAAAGAAAA (12) 1.8 0.0018 P4.5 retina AAAAAAAAAA (658) 283.3 0.2833 P4.5 retina GGTGGAACGG (4) 13.9 0.0139 P4.5 retina AGATAAAAAA (5) 7.9 0.0079 P4.5 retina AAAAAAAAAT (25) 4 0.004 P4.5 retina AATAAAAAAG (3) 2 0.002 P4.5 retina GAAAAGAAAA (12) 2 0.002 P4.5 retina GATTGAATAA 2 0.002 P6.5 retina AAAAAAAAAA (658) 266.8 0.2668 P6.5 retina GGTGGAACGG (4) 3.3 0.0033 P6.5 retina TGATTCCAGA (4) 1.7 0.0017 P6.5 retina TTTTTGTTTT (9) 1.7 0.0017 P10.5 crx- retina AAAAAAAAAA (658) 44.6 0.0446 P10.5 crx- retina AAAAAAAAAT (25) 3.7 0.0037 P10.5 crx- retina AATAAAAAAG (3) 3.7 0.0037 P10.5 crx- retina AGATAAAAAA (5) 1.9 0.0019 P10.5 crx+ retina AAAAAAAAAA (658) 96.1 0.0961 P10.5 crx+ retina GGTGGAACGG (4) 3.8 0.0038 P10.5 crx+ retina AATAAAAAAG (3) 1.9 0.0019 P10.5 crx+ retina AGATAAAAAA (5) 1.9 0.0019 Adult retinal AAAAAAAAAA (658) 57.4 0.0574 Adult retinal AATAAAAAAG (3) 3.7 0.0037 Adult retinal GGTGGAACGG (4) 3.7 0.0037 Adult retinal AAAAAAAAAT (25) 1.9 0.0019 ONL AAAAAAAAAA (658) 103.4 0.1034 ONL TTTTTGTTTT (9) 7.7 0.0077 ONL AATAAAAAAG (3) 3.8 0.0038 ONL AAAAAAAAAT (25) 1.9 0.0019