Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.277870	Snx3	sorting nexin 3	10	10 25.5 cM	54198
Gene Ontology	cellular_component unknown | intracellular signaling cascade | molecular_function unknown | protein transport | transport
Human Homolog	SNX3[sorting nexin 3]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 64 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GCCCCCGCAT (3) 13.1 0.0131 P8 Cb GC AAAGATTAAT (2) 8.2 0.0082 P8 Cb GC TTTTTTTTTT (433) 4.9 0.0049 P8 Cb GC GGAAGGGGAA (5) 1.6 0.0016 Cb medulloblastoma AAAGATTAAT (2) 4.6 0.0046 Cb medulloblastoma GGAAGGGGAA (5) 4.6 0.0046 Cb medulloblastoma GCCCCCGCAT (3) 2.3 0.0023 Cb medulloblastoma TTTTTTTTTT (433) 2.3 0.0023 P8 GC+1d culture TTTTTTTTTT (433) 13.7 0.0137 P8 GC+1d culture AAAGATTAAT (2) 10.3 0.0103 P8 GC+1d culture GCCCCCGCAT (3) 8 0.008 P8 GC+1d culture ACACAGAAAC (8) 2.3 0.0023 P8 GC+SHH+1d culture GCCCCCGCAT (3) 14.1 0.0141 P8 GC+SHH+1d culture TTTTTTTTTT (433) 5.9 0.0059 P8 GC+SHH+1d culture AAAGATTAAT (2) 4.7 0.0047 3T3 fibroblasts ACACAGAAAC (8) 10.5 0.0105 E15 cortex GCCCCCGCAT (3) 4.9 0.0049 E15 cortex GCCTCTGCGT (5) 4.9 0.0049 E15 cortex TTTTTTTTTT (433) 4.9 0.0049 P1 cortex ACACAGAAAC (8) 22.7 0.0227 P1 cortex AAAGATTAAT (2) 18.2 0.0182 P1 cortex GCCCCCGCAT (3) 4.5 0.0045 P1 cortex TTTTTTTTTT (433) 4.5 0.0045 Hypothalamus AAAGATTAAT (2) 16.3 0.0163 Hypothalamus GCCCCCGCAT (3) 9.1 0.0091 Hypothalamus TTTTTTTTTT (433) 7.2 0.0072 Hypothalamus ACACAGAAAC (8) 3.6 0.0036 E12.5 retina AAAGATTAAT (2) 9.4 0.0094 E12.5 retina TTTTTTTTTT (433) 7.5 0.0075 E12.5 retina GCCCCCGCAT (3) 3.8 0.0038 E12.5 retina GGAAATCAAA (2) 3.8 0.0038 E14.5 retina TTTTTTTTTT (433) 23.7 0.0237 E14.5 retina AAAGATTAAT (2) 12.8 0.0128 E16.5 retina AAAGATTAAT (2) 5.4 0.0054 E16.5 retina GCCCCCGCAT (3) 5.4 0.0054 E16.5 retina TTTTTTTTTT (433) 5.4 0.0054 E18.5 retina AAAGATTAAT (2) 16.4 0.0164 E18.5 retina TTTTTTTTTT (433) 10.9 0.0109 E18.5 retina GCCCCCGCAT (3) 7.3 0.0073 P0.5 retina TTTTTTTTTT (433) 9.8 0.0098 P0.5 retina AAAGATTAAT (2) 5.9 0.0059 P0.5 retina GCCCCCGCAT (3) 3.9 0.0039 P0.5 retina GCCTCTGCGT (5) 2 0.002 P2.5 retina AAAGATTAAT (2) 8.8 0.0088 P2.5 retina GCCCCCGCAT (3) 7 0.007 P2.5 retina TTTTTTTTTT (433) 7 0.007 P2.5 retina ACACAGAAAC (8) 1.8 0.0018 P4.5 retina AAAGATTAAT (2) 9.9 0.0099 P4.5 retina TTTTTTTTTT (433) 9.9 0.0099 P4.5 retina GCCCCCGCAT (3) 2 0.002 P6.5 retina AAAGATTAAT (2) 13.3 0.0133 P6.5 retina TTTTTTTTTT (433) 8.3 0.0083 P6.5 retina GCCCCCGCAT (3) 6.7 0.0067 P6.5 retina GCCTCTGCGT (5) 1.7 0.0017 P10.5 crx- retina GCCCCCGCAT (3) 9.3 0.0093 P10.5 crx- retina AAAGATTAAT (2) 5.6 0.0056 P10.5 crx+ retina AAAGATTAAT (2) 5.8 0.0058 P10.5 crx+ retina GCCCCCGCAT (3) 5.8 0.0058 P10.5 crx+ retina TTTTTTTTTT (433) 3.8 0.0038 Adult retinal TTTTTTTTTT (433) 7.4 0.0074 Adult retinal GCCCCCGCAT (3) 1.9 0.0019 Adult retinal GGAAATCAAA (2) 1.9 0.0019 ONL AAAGATTAAT (2) 3.8 0.0038 ONL TTTTTTTTTT (433) 3.8 0.0038