Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.278643
6330569M22Rik
RIKEN cDNA 6330569M22 gene
3
229707
Human Homolog
FAM40A[family with sequence similarity 40, member A]
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 51 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
GTGGGGTTTT
(
4
)
4.9
0.0049
P8 Cb GC
AACACACAGT (
3
)
1.6
0.0016
Cb medulloblastoma
GTGGGGTTTT
(
4
)
16.2
0.0162
Cb medulloblastoma
AACACACAGT (
3
)
2.3
0.0023
P8 GC+1d culture
GTGGGGTTTT
(
4
)
11.4
0.0114
P8 GC+1d culture
GCTGGAGAGC
2.3
0.0023
P8 GC+1d culture
GGTGGGGGTT (
4
)
1.1
0.0011
P8 GC+SHH+1d culture
GTGGGGTTTT
(
4
)
4.7
0.0047
P8 GC+SHH+1d culture
AACACACAGT (
3
)
2.3
0.0023
P8 GC+SHH+1d culture
GCTGGAGAGC
1.2
0.0012
3T3 fibroblasts
GGTGGGGGTT (
4
)
3.5
0.0035
3T3 fibroblasts
GTGGGGTTTT
(
4
)
3.5
0.0035
E15 cortex
GTGGGGTTTT
(
4
)
24.7
0.0247
E15 cortex
GGTGGGGGTT (
4
)
9.9
0.0099
E15 cortex
AACACACAGT (
3
)
4.9
0.0049
P1 cortex
AACACACAGT (
3
)
4.5
0.0045
P1 cortex
GCTGGAGAGC
4.5
0.0045
P1 cortex
GTGGGGTTTT
(
4
)
4.5
0.0045
Hypothalamus
GGTGGGGGTT (
4
)
3.6
0.0036
Hypothalamus
GATGCAGCCT (
4
)
1.8
0.0018
E12.5 retina
GTGGGGTTTT
(
4
)
13.1
0.0131
E14.5 retina
GTGGGGTTTT
(
4
)
10.9
0.0109
E14.5 retina
GGTGGGGGTT (
4
)
1.8
0.0018
E16.5 retina
GTGGGGTTTT
(
4
)
16.3
0.0163
E16.5 retina
GGTGGGGGTT (
4
)
3.6
0.0036
E16.5 retina
GATGCAGCCT (
4
)
1.8
0.0018
E18.5 retina
GTGGGGTTTT
(
4
)
12.7
0.0127
E18.5 retina
GCAACCGAGA
1.8
0.0018
P0.5 retina
GTGGGGTTTT
(
4
)
11.8
0.0118
P0.5 retina
GGTGGGGGTT (
4
)
2
0.002
P2.5 retina
GTGGGGTTTT
(
4
)
15.8
0.0158
P2.5 retina
AACACACAGT (
3
)
1.8
0.0018
P4.5 retina
GTGGGGTTTT
(
4
)
19.8
0.0198
P4.5 retina
GGTGGGGGTT (
4
)
4
0.004
P4.5 retina
GATGCAGCCT (
4
)
2
0.002
P6.5 retina
GTGGGGTTTT
(
4
)
11.7
0.0117
P6.5 retina
GCTGGAGAGC
1.7
0.0017
P6.5 retina
GGTGGGGGTT (
4
)
1.7
0.0017
P10.5 crx- retina
GTGGGGTTTT
(
4
)
11.1
0.0111
P10.5 crx- retina
GCAACCGAGA
5.6
0.0056
P10.5 crx- retina
AACACACAGT (
3
)
3.7
0.0037
P10.5 crx- retina
GCTGGAGAGC
1.9
0.0019
P10.5 crx- retina
GGTGGGGGTT (
4
)
1.9
0.0019
P10.5 crx+ retina
GTGGGGTTTT
(
4
)
13.5
0.0135
P10.5 crx+ retina
AACACACAGT (
3
)
11.5
0.0115
Adult retinal
AACACACAGT (
3
)
24.1
0.0241
Adult retinal
GTGGGGTTTT
(
4
)
13
0.013
Adult retinal
GGTGGGGGTT (
4
)
5.6
0.0056
ONL
AACACACAGT (
3
)
11.5
0.0115
ONL
GTGGGGTTTT
(
4
)
5.7
0.0057
ONL
GCTGGAGAGC
1.9
0.0019
