Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.278701	Srebf1	sterol regulatory element binding factor 1	8	8 33.0 cM	20787
Gene Ontology	cholesterol metabolism | DNA binding | endoplasmic reticulum | Golgi apparatus | integral to membrane | lipid metabolism | nucleus | regulation of transcription | regulation of transcription, DNA-dependent | transcription factor activity
Human Homolog	SREBF1[sterol regulatory element binding transcription factor 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 141 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAGGCACAGC (2) AGGCCACAGC CTCGCTTCTG (2) GCTGCCACCA (2) GGCCTGCCCC GTGACACCTG (3) TACTACTTTG TGCAACACTG (3) TGGTGACACA 30.8 0.0308 Cb medulloblastoma AAGGCACAGC (2) AGGCCACAGC GCTGCCACCA (2) GGCCTGGCCT (2) GTGACACCTG (3) TACTACTTTG TGCAACACTG (3) TGGTGACACA 32.2 0.0322 P8 GC+1d culture AAGGCACAGC (2) ACCAAAGAAA AGGCCACAGC GCTGCCACAC GGCCTGGCCT (2) GTGACACCTG (3) TGCAACACTG (3) 15.9 0.0159 P8 GC+SHH+1d culture AAGGCACAGC (2) ACCAAAGAAA AGGCCACAGC CTCGCTTCTG (2) GCTGCCACCA (2) TACTACTTTG TGGTGACACA 30.6 0.0306 3T3 fibroblasts CGTGCAGGCA CTCGCTTCTG (2) GCTGCCACCA (2) GGCCTGGCCT (2) GTGACACCTG (3) 56.1 0.0561 E15 cortex AGGCCACAGC CTGGCCGAGG (2) GCTGCCACCA (2) GGCCTGCCCT GGCCTGGCCT (2) GTGACACCTG (3) TGCAACACTG (3) 59.2 0.0592 P1 cortex GCTGCCACCA (2) GGCCTGGCCT (2) GTGACACCTG (3) TACTACTTTG 27.2 0.0272 Hypothalamus AGGCCACAGC CTGGCCGAGG (2) GCTGCCACAC GGGCTGCCCT (4) GTGACACCTG (3) TACTACTTTG 32.6 0.0326 E12.5 retina AGGCCACAGC CTCGCTTCTG (2) GCTGCCACAC GGCCTGCCCC GGCCTGGCCT (2) GGGCTGCCCT (4) TACTACTTTG TGGTGACACA 22.7 0.0227 E14.5 retina AGGCCACAGC CGTGCAGGCA CTCGCTTCTG (2) GGCCTGCCCC TACTACTTTG TGCAACACTG (3) TGGTGACACA 40 0.04 E16.5 retina AAGGCACAGC (2) AGGCCACAGC GCTGCCACCA (2) GGCCTGCCCC GGCCTGCCCT GGCCTGGCCT (2) GGGCTGCCCT (4) GTGACACCTG (3) TACTACTTTG TGCAACACTG (3) TGGTGACACA 57.8 0.0578 E18.5 retina AAGGCACAGC (2) AGGCCACAGC GGCCTGCCCC GGCCTGCCCT GGCCTGGCCT (2) GTGACACCTG (3) TACTACTTTG TGGTGACACA 27.2 0.0272 P0.5 retina CTCGCTTCTG (2) GGCCTGGCCT (2) TACTACTTTG 19.7 0.0197 P2.5 retina AAGGCACAGC (2) AGGCCACAGC CTCGCTTCTG (2) CTGGCCGAGG (2) GCTGCCACCA (2) GGCCTGCCCC TACTACTTTG TGGTGACACA 30 0.03 P4.5 retina AAGGCACAGC (2) ACCAAAGAAA AGGCCACAGC GGCCTGCCCC GTGACACCTG (3) TACTACTTTG 21.9 0.0219 P6.5 retina AGGCCACAGC CTCGCTTCTG (2) GCCCCAACAG GCTGCCACCA (2) GGCCTGCCCC GGCCTGGCCT (2) GTGACACCTG (3) TACTACTTTG TGCAACACTG (3) 31.9 0.0319 P10.5 crx- retina AAGGCACAGC (2) AGGCCACAGC GCCCCAACAG GGCCTGCCCT GGGCTGCCCT (4) GTGACACCTG (3) TACTACTTTG 57.7 0.0577 P10.5 crx+ retina AAGGCACAGC (2) AGGCCACAGC GCCCCAACAG GCTGCCACAC GGCCTGCCCC GTGACACCTG (3) TACTACTTTG TGGTGACACA 32.6 0.0326 Adult retinal AAGGCACAGC (2) ACCAAAGAAA GCCCCAACAG GCTGCCACAC GGCCTGGCCT (2) GTGACACCTG (3) TACTACTTTG 20.6 0.0206 ONL CGTGCAGGCA GCCCCAACAG GCTGCCACAC GGCCTGGCCT (2) GTGACACCTG (3) TACTACTTTG 22.8 0.0228