Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.27897	Dnaja1	DnaJ (Hsp40) homolog, subfamily A, member 1	4		15502
Gene Ontology	protein folding | response to heat
Human Homolog	DNAJA1[DnaJ (Hsp40) homolog, subfamily A, member 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 124 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAAAAAAAAA (658) 203.9 0.2039 P8 Cb GC CTTAAATCTG (4) 19.6 0.0196 P8 Cb GC ATAAAAAAAA (33) 11.4 0.0114 P8 Cb GC GGGATATAAA (2) 3.3 0.0033 P8 Cb GC CTAGGTATGT 1.6 0.0016 P8 Cb GC CTGTTTTTAC (3) 1.6 0.0016 P8 Cb GC GAATCATAAT (3) 1.6 0.0016 P8 Cb GC GAGAACGCAT 1.6 0.0016 P8 Cb GC GATATCTTTG (2) 1.6 0.0016 P8 Cb GC TCGGTCTGTC 1.6 0.0016 Cb medulloblastoma AAAAAAAAAA (658) 797.8 0.7978 Cb medulloblastoma ATAAAAAAAA (33) 25.4 0.0254 Cb medulloblastoma CTTAAATCTG (4) 4.6 0.0046 P8 GC+1d culture AAAAAAAAAA (658) 204.3 0.2043 P8 GC+1d culture CTTAAATCTG (4) 13.7 0.0137 P8 GC+1d culture GGGATATAAA (2) 8 0.008 P8 GC+1d culture ATAAAAAAAA (33) 5.7 0.0057 P8 GC+1d culture CTGTAGATGC (5) 4.6 0.0046 P8 GC+1d culture TCGGTCTGTC 1.1 0.0011 P8 GC+SHH+1d culture AAAAAAAAAA (658) 278.7 0.2787 P8 GC+SHH+1d culture ATAAAAAAAA (33) 21.1 0.0211 P8 GC+SHH+1d culture CTTAAATCTG (4) 11.7 0.0117 P8 GC+SHH+1d culture GGGATATAAA (2) 8.2 0.0082 P8 GC+SHH+1d culture CTAGGTATGT 3.5 0.0035 P8 GC+SHH+1d culture CTGTAGATGC (5) 1.2 0.0012 P8 GC+SHH+1d culture CTGTTTTTAC (3) 1.2 0.0012 3T3 fibroblasts AAAAAAAAAA (658) 28 0.028 3T3 fibroblasts CTGTAGATGC (5) 3.5 0.0035 3T3 fibroblasts CTTAAATCTG (4) 3.5 0.0035 E15 cortex AAAAAAAAAA (658) 212.8 0.2128 E15 cortex GAGAACGCAT 4.9 0.0049 E15 cortex GATATCTTTG (2) 4.9 0.0049 P1 cortex AAAAAAAAAA (658) 245.4 0.2454 P1 cortex GGGATATAAA (2) 18.2 0.0182 P1 cortex CTTAAATCTG (4) 13.6 0.0136 P1 cortex CTGTTTTTAC (3) 4.5 0.0045 Hypothalamus AAAAAAAAAA (658) 123.2 0.1232 Hypothalamus CTTAAATCTG (4) 10.9 0.0109 Hypothalamus ATAAAAAAAA (33) 7.2 0.0072 Hypothalamus GAATCATAAT (3) 7.2 0.0072 Hypothalamus CTAGGTATGT 1.8 0.0018 Hypothalamus CTGTAGATGC (5) 1.8 0.0018 Hypothalamus TCGGTCTGTC 1.8 0.0018 E12.5 retina AAAAAAAAAA (658) 138.9 0.1389 E12.5 retina ATAAAAAAAA (33) 11.3 0.0113 E12.5 retina CTTAAATCTG (4) 11.3 0.0113 E12.5 retina GGGATATAAA (2) 3.8 0.0038 E12.5 retina CAGCAGTAGA (3) 1.9 0.0019 E12.5 retina CTAGGTATGT 1.9 0.0019 E12.5 retina CTGTAGATGC (5) 1.9 0.0019 E14.5 retina AAAAAAAAAA (658) 94.7 0.0947 E14.5 retina ATAAAAAAAA (33) 16.4 0.0164 E14.5 retina CTTAAATCTG (4) 12.8 0.0128 E14.5 retina GGGATATAAA (2) 5.5 0.0055 E14.5 retina CTAGGTATGT 1.8 0.0018 E14.5 retina CTGTAGATGC (5) 1.8 0.0018 E14.5 retina TCGGTCTGTC 1.8 0.0018 E16.5 retina AAAAAAAAAA (658) 43.5 0.0435 E16.5 retina CTTAAATCTG (4) 12.7 0.0127 E16.5 retina ATAAAAAAAA (33) 5.4 0.0054 E16.5 retina GAGAACGCAT 3.6 0.0036 E16.5 retina GGGATATAAA (2) 3.6 0.0036 E16.5 retina CTAGGTATGT 1.8 0.0018 E16.5 retina CTGTTTTTAC (3) 1.8 0.0018 E16.5 retina GAAAATGTAA (2) 1.8 0.0018 E16.5 retina TTTTCTGTTT (10) 1.8 0.0018 E18.5 retina AAAAAAAAAA (658) 374.7 0.3747 E18.5 retina ATAAAAAAAA (33) 30.9 0.0309 E18.5 retina CTTAAATCTG (4) 21.8 0.0218 E18.5 retina CTAGGTATGT 5.5 0.0055 E18.5 retina GGGATATAAA (2) 5.5 0.0055 E18.5 retina CAGCAGTAGA (3) 3.6 0.0036 E18.5 retina TCGGTCTGTC 1.8 0.0018 P0.5 retina AAAAAAAAAA (658) 117.8 0.1178 P0.5 retina CTTAAATCTG (4) 13.7 0.0137 P0.5 retina CTGTAGATGC (5) 3.9 0.0039 P0.5 retina ATAAAAAAAA (33) 2 0.002 P0.5 retina GATATCTTTG (2) 2 0.002 P2.5 retina AAAAAAAAAA (658) 329.1 0.3291 P2.5 retina CTTAAATCTG (4) 17.6 0.0176 P2.5 retina ATAAAAAAAA (33) 14.1 0.0141 P2.5 retina GGGATATAAA (2) 3.5 0.0035 P2.5 retina CTAGGTATGT 1.8 0.0018 P2.5 retina CTGTAGATGC (5) 1.8 0.0018 P2.5 retina CTGTTTTTAC (3) 1.8 0.0018 P4.5 retina AAAAAAAAAA (658) 283.3 0.2833 P4.5 retina ATAAAAAAAA (33) 21.8 0.0218 P4.5 retina CTTAAATCTG (4) 11.9 0.0119 P4.5 retina CTAGGTATGT 4 0.004 P4.5 retina CTGTAGATGC (5) 4 0.004 P4.5 retina GGGATATAAA (2) 4 0.004 P4.5 retina GAAAATGTAA (2) 2 0.002 P6.5 retina AAAAAAAAAA (658) 266.8 0.2668 P6.5 retina CTTAAATCTG (4) 13.3 0.0133 P6.5 retina ATAAAAAAAA (33) 10 0.01 P6.5 retina CTAGGTATGT 3.3 0.0033 P6.5 retina GAATCATAAT (3) 1.7 0.0017 P6.5 retina GGGATATAAA (2) 1.7 0.0017 P6.5 retina TTTTCTGTTT (10) 1.7 0.0017 P10.5 crx- retina AAAAAAAAAA (658) 44.6 0.0446 P10.5 crx- retina CTTAAATCTG (4) 14.9 0.0149 P10.5 crx- retina GGGATATAAA (2) 7.4 0.0074 P10.5 crx- retina ATAAAAAAAA (33) 5.6 0.0056 P10.5 crx- retina CTAGGTATGT 5.6 0.0056 P10.5 crx- retina CTGTTTTTAC (3) 5.6 0.0056 P10.5 crx- retina GAATCATAAT (3) 1.9 0.0019 P10.5 crx- retina TTTTCTGTTT (10) 1.9 0.0019 P10.5 crx+ retina AAAAAAAAAA (658) 96.1 0.0961 P10.5 crx+ retina CTTAAATCTG (4) 11.5 0.0115 P10.5 crx+ retina ATAAAAAAAA (33) 3.8 0.0038 P10.5 crx+ retina TCGGTCTGTC 3.8 0.0038 P10.5 crx+ retina GATATCTTTG (2) 1.9 0.0019 P10.5 crx+ retina TTTTCTGTTT (10) 1.9 0.0019 Adult retinal AAAAAAAAAA (658) 57.4 0.0574 Adult retinal CTTAAATCTG (4) 11.1 0.0111 Adult retinal CTGTAGATGC (5) 3.7 0.0037 Adult retinal CTGTTTTTAC (3) 1.9 0.0019 Adult retinal TCGGTCTGTC 1.9 0.0019 Adult retinal TTTTCTGTTT (10) 1.9 0.0019 ONL AAAAAAAAAA (658) 103.4 0.1034 ONL ATAAAAAAAA (33) 1.9 0.0019 ONL CTGTAGATGC (5) 1.9 0.0019 ONL CTTAAATCTG (4) 1.9 0.0019 ONL GAAAATGTAA (2) 1.9 0.0019