Mouse Retina SAGE Library

[Home]    [Libraries]    [Images]

---

Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

---

UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.279195	Idh3a	isocitrate dehydrogenase 3 (NAD+) alpha	9		67834
Gene Ontology	isocitrate dehydrogenase (NAD+) activity | metabolism | mitochondrion | mitochondrion | oxidoreductase activity | tricarboxylic acid cycle
Human Homolog	IDH3A[isocitrate dehydrogenase 3 (NAD+) alpha]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 101 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GGATGCTGGG (5) 31 0.031 P8 Cb GC AATTACTATT 8.2 0.0082 P8 Cb GC GACAAGCAGA (5) 3.3 0.0033 P8 Cb GC TTTTGCTACA (3) 3.3 0.0033 P8 Cb GC ACTGAGGCTG (4) 1.6 0.0016 P8 Cb GC ATTAAAAATA (3) 1.6 0.0016 P8 Cb GC CTGTGGACCA (3) 1.6 0.0016 Cb medulloblastoma GGATGCTGGG (5) 18.5 0.0185 Cb medulloblastoma AATTACTATT 4.6 0.0046 Cb medulloblastoma CTGTGGACCA (3) 4.6 0.0046 Cb medulloblastoma GACAAGCAGA (5) 2.3 0.0023 P8 GC+1d culture GGATGCTGGG (5) 29.7 0.0297 P8 GC+1d culture TTTTGCTACA (3) 4.6 0.0046 P8 GC+1d culture AACCTAGCCT 1.1 0.0011 P8 GC+1d culture AATTACTATT 1.1 0.0011 P8 GC+1d culture ATGGCCCCAG (4) 1.1 0.0011 P8 GC+1d culture ATTAAAAATA (3) 1.1 0.0011 P8 GC+1d culture CAGAGTAGGC (2) 1.1 0.0011 P8 GC+1d culture CTGTGGACCA (3) 1.1 0.0011 P8 GC+SHH+1d culture GGATGCTGGG (5) 35.1 0.0351 P8 GC+SHH+1d culture AATTACTATT 4.7 0.0047 P8 GC+SHH+1d culture ATTAAAAATA (3) 2.3 0.0023 P8 GC+SHH+1d culture TTTTGCTACA (3) 2.3 0.0023 3T3 fibroblasts GGATGCTGGG (5) 17.5 0.0175 3T3 fibroblasts GGGACTTTTG (2) 3.5 0.0035 E15 cortex GGATGCTGGG (5) 74.2 0.0742 E15 cortex TTTTGCTACA (3) 4.9 0.0049 P1 cortex ATTAAAAATA (3) 9.1 0.0091 P1 cortex GGATGCTGGG (5) 9.1 0.0091 P1 cortex AACCTAGCCT 4.5 0.0045 P1 cortex AATTACTATT 4.5 0.0045 P1 cortex TTTTGCTACA (3) 4.5 0.0045 Hypothalamus GGATGCTGGG (5) 7.2 0.0072 Hypothalamus ATTAAAAATA (3) 5.4 0.0054 Hypothalamus AATTACTATT 3.6 0.0036 Hypothalamus AACCTAGCCT 1.8 0.0018 Hypothalamus ACTGAGGCTG (4) 1.8 0.0018 Hypothalamus CAGAGTAGGC (2) 1.8 0.0018 E12.5 retina GGATGCTGGG (5) 45.1 0.0451 E12.5 retina ATGGCCCCAG (4) 3.8 0.0038 E12.5 retina AATTACTATT 1.9 0.0019 E12.5 retina TTTTGCTACA (3) 1.9 0.0019 E14.5 retina GGATGCTGGG (5) 18.2 0.0182 E14.5 retina TTTTGCTACA (3) 7.3 0.0073 E14.5 retina GATAAAAACA (6) 3.6 0.0036 E14.5 retina AATTACTATT 1.8 0.0018 E16.5 retina GGATGCTGGG (5) 18.1 0.0181 E16.5 retina AATTACTATT 3.6 0.0036 E16.5 retina TTTTGCTACA (3) 3.6 0.0036 E16.5 retina ATGGCCCCAG (4) 1.8 0.0018 E16.5 retina GACAAGCAGA (5) 1.8 0.0018 E18.5 retina GGATGCTGGG (5) 40 0.04 E18.5 retina AATTACTATT 3.6 0.0036 E18.5 retina GGGACTTTTG (2) 1.8 0.0018 E18.5 retina GGGGGCTCTG (7) 1.8 0.0018 P0.5 retina GGATGCTGGG (5) 23.6 0.0236 P0.5 retina AATTACTATT 3.9 0.0039 P0.5 retina AACCTAGCCT 2 0.002 P0.5 retina TTTTGCTACA (3) 2 0.002 P2.5 retina GGATGCTGGG (5) 42.2 0.0422 P2.5 retina AATTACTATT 7 0.007 P2.5 retina ATTAAAAATA (3) 3.5 0.0035 P2.5 retina AACCTAGCCT 1.8 0.0018 P2.5 retina CAGAGTAGGC (2) 1.8 0.0018 P2.5 retina GACAAGCAGA (5) 1.8 0.0018 P2.5 retina GGGGGCTCTG (7) 1.8 0.0018 P2.5 retina TTTTGCTACA (3) 1.8 0.0018 P4.5 retina GGATGCTGGG (5) 25.8 0.0258 P4.5 retina ATTAAAAATA (3) 4 0.004 P4.5 retina AACCTAGCCT 2 0.002 P4.5 retina AATTACTATT 2 0.002 P4.5 retina ATGGCCCCAG (4) 2 0.002 P4.5 retina CTGTGGACCA (3) 2 0.002 P4.5 retina GATAAAAACA (6) 2 0.002 P4.5 retina GGGGGCTCTG (7) 2 0.002 P4.5 retina TTTTGCTACA (3) 2 0.002 P6.5 retina GGATGCTGGG (5) 6.7 0.0067 P6.5 retina AATTACTATT 5 0.005 P6.5 retina ATTAAAAATA (3) 3.3 0.0033 P6.5 retina ACTGAGGCTG (4) 1.7 0.0017 P6.5 retina GGGACTTTTG (2) 1.7 0.0017 P6.5 retina TTTTGCTACA (3) 1.7 0.0017 P10.5 crx- retina GGATGCTGGG (5) 26 0.026 P10.5 crx- retina AACCTAGCCT 3.7 0.0037 P10.5 crx- retina AATTACTATT 3.7 0.0037 P10.5 crx- retina CAGAGTAGGC (2) 1.9 0.0019 P10.5 crx- retina GGGGGCTCTG (7) 1.9 0.0019 P10.5 crx- retina TTTTGCTACA (3) 1.9 0.0019 P10.5 crx+ retina GGATGCTGGG (5) 26.9 0.0269 P10.5 crx+ retina TTTTGCTACA (3) 5.8 0.0058 P10.5 crx+ retina AACCTAGCCT 3.8 0.0038 P10.5 crx+ retina CAGAGTAGGC (2) 3.8 0.0038 P10.5 crx+ retina AATTACTATT 1.9 0.0019 Adult retinal GGATGCTGGG (5) 24.1 0.0241 Adult retinal AACCTAGCCT 5.6 0.0056 Adult retinal AATTACTATT 1.9 0.0019 Adult retinal ATTAAAAATA (3) 1.9 0.0019 ONL AATTACTATT 11.5 0.0115 ONL AACCTAGCCT 3.8 0.0038 ONL GGATGCTGGG (5) 3.8 0.0038 ONL TTTTGCTACA (3) 1.9 0.0019